myRT

myRT report for GCA_000420725.1_ASM42072v1

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Seq: ATVM01000016.1 Marinococcus halotolerans DSM 16375 G548DRAFT_scaffold00016.16_C, whole genome shotgun sequence (72094 bp)
Overview 1 RT 1: 14193-23064 bp Neighborhood of RT #1 [14193, 23132] H_N_K_Ras_like RVT-Retrons hsdR HsdR HsdM Feature: gene Location: 14193-15341 bp Feature: domain Description: H_N_K_Ras_like Location: 14856-15102 bp Feature: domain Description: H_N_K_Ras_like Location: 1 4856-1 51 02 bp Feature: gene Location: 15838-16779 bp Feature: gene Location: 17026-18213 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17143-17686 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 71 43-1 7686 bp Feature: gene Location: 18400-21657 bp Feature: domain Description: hsdR Location: 18421-18859 bp Feature: domain Description: hsdR Location: 1 8421 -1 8859 bp Feature: domain Description: HsdR Location: 18985-21640 bp Feature: domain Description: HsdR Location: 1 8985-21 640 bp Feature: gene Location: 21657-23132 bp Feature: domain Description: HsdM Location: 21669-23064 bp Feature: domain Description: HsdM Location: 21 669-23064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT H_N_K_Ras_like (cd04138), RVT-Retrons, hsdR (TIGR00348), HsdR (COG4096), HsdM (COG0286)

Seq: ATVM01000027.1 Marinococcus halotolerans DSM 16375 G548DRAFT_scaffold00027.27_C, whole genome shotgun sequence (35275 bp)
Overview 1 RT 1: 157-4169 bp Neighborhood of RT #1 [157, 4189] RVT-GII HNHc ComEC holA Feature: gene Location: 157-390 bp Feature: gene Location: 465-650 bp Feature: gene Location: 740-2569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1040-1739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1040-1739 bp Feature: domain Description: HNHc Note: nucleases Location: 2297-2423 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 97-2 42 3 bp Feature: gene Location: 2714-3079 bp Feature: domain Description: ComEC Location: 2717-3062 bp Feature: domain Description: ComEC Location: 2 717-3062 bp Feature: gene Location: 3155-4189 bp Feature: domain Description: holA Location: 3179-4169 bp Feature: domain Description: holA Location: 3179-4169 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ComEC (COG2333), holA (TIGR01128), RVT-GII, HNHc (smart00507)

Seq: ATVM01000031.1 Marinococcus halotolerans DSM 16375 G548DRAFT_scaffold00031.31_C, whole genome shotgun sequence (23300 bp)
Overview 1 RT 1: 15337-22901 bp Neighborhood of RT #1 [15337, 22901] TraG_VirD4 TraG_VirD4 RVT-GII HNHc Feature: gene Location: 15337-18426 bp Feature: gene Location: 18623-20614 bp Feature: domain Description: TraG_VirD4 Location: 18761-19184 bp Feature: domain Description: TraG_VirD4 Location: 18761-19184 bp Feature: domain Description: TraG_VirD4 Location: 19487-19964 bp Feature: domain Description: TraG_VirD4 Location: 19487-19964 bp Feature: gene Location: 20732-22561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21032-21731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2103 2-2173 1 bp Feature: domain Description: HNHc Note: nucleases Location: 22289-22415 bp Feature: domain Description: HNHc Note: nucleases Location: 22289-22415 bp Feature: gene Location: 22752-22901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG_VirD4, RVT-GII, HNHc (smart00507)