myRT

myRT report for GCA_000420885.1_ASM42088v1

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Seq: ATVU01000004.1 Dorea sp. AGR2135 G593DRAFT_scaffold00004.4_C, whole genome shotgun sequence (210529 bp)
Overview 1 RT 1: 44428-50702 bp 2 RT 2: 58329-74920 bp Neighborhood of RT #1 [44428, 50785] VirD4 VirD4 Maff2 RVT-GII HNHc PrgI Neighborhood of RT #2 [58329, 76095] PRK07726 YtxK COG4646 PRK01172 RVT_N RVT-GII GIIM KOG1000 Peptidase_M78 YodL DUF3849 LPD18 LPD16 LPD16 Feature: gene Location: 44428-46365 bp Feature: domain Description: VirD4 Location: 44689-45043 bp Feature: domain Description: VirD4 Location: 44689-45043 bp Feature: domain Description: VirD4 Location: 45121-46243 bp Feature: domain Description: VirD4 Location: 451 21 -46243 bp Feature: gene Location: 46513-46644 bp Feature: domain Description: Maff2 Location: 46516-46642 bp Feature: domain Description: Maff2 Location: 4651 6-46642 bp Feature: gene Location: 47364-49250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47697-48435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47697-48435 bp Feature: domain Description: HNHc Note: nucleases Location: 48981-49134 bp Feature: domain Description: HNHc Note: nucleases Location: 48981 -491 34 bp Feature: gene Location: 49523-50392 bp Feature: gene Location: 50417-50785 bp Feature: domain Description: PrgI Location: 50435-50702 bp Feature: domain Description: PrgI Location: 50435-50702 bp Feature: gene Location: 58329-60443 bp Feature: domain Description: PRK07726 Location: 58344-60219 bp Feature: domain Description: PRK07726 Location: 58344-6021 9 bp Feature: gene Location: 60471-67877 bp Feature: domain Description: YtxK Location: 64455-64866 bp Feature: domain Description: YtxK Location: 64455-64866 bp Feature: domain Description: COG4646 Location: 64932-67494 bp Feature: domain Description: COG4646 Location: 64932-67494 bp Feature: domain Description: PRK01172 Location: 67632-67836 bp Feature: domain Description: PRK01 1 72 Location: 67632-67836 bp Feature: gene Location: 68476-70113 bp Feature: RT Description: RVT_N Location: 68527-68770 bp Feature: RT Description: RVT_N Location: 68527-68770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68815-69463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6881 5-69463 bp Feature: domain Description: GIIM Note: maturase Location: 69514-69748 bp Feature: domain Description: GIIM Note: maturase Location: 6951 4-69748 bp Feature: gene Location: 70151-71299 bp Feature: domain Description: KOG1000 Location: 70220-70499 bp Feature: domain Description: KOG1 000 Location: 70220-70499 bp Feature: gene Location: 71344-76095 bp Feature: domain Description: Peptidase_M78 Location: 71875-72082 bp Feature: domain Description: Peptidase_M78 Location: 71 875-72082 bp Feature: domain Description: YodL Location: 72844-73138 bp Feature: domain Description: YodL Location: 72844-731 38 bp Feature: domain Description: DUF3849 Location: 73195-73570 bp Feature: domain Description: DUF3849 Location: 731 95-73570 bp Feature: domain Description: LPD18 Location: 73609-73852 bp Feature: domain Description: LPD1 8 Location: 73609-73852 bp Feature: domain Description: LPD16 Location: 74362-74575 bp Feature: domain Description: LPD1 6 Location: 74362-74575 bp Feature: domain Description: LPD16 Location: 74719-74920 bp Feature: domain Description: LPD1 6 Location: 7471 9-74920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), Maff2 (pfam12750), RVT-GII, HNHc (smart00507), PrgI (pfam12666), PRK07726 (DNA topoisomerase 3), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), PRK01172 (ATP-dependent DNA helicase), RVT_N (pfam13655)
GIIM (pfam08388), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), Peptidase_M78 (pfam06114), YodL (pfam14191), DUF3849 (pfam12960), LPD18 (pfam18832), LPD16 (pfam18830)

Seq: ATVU01000019.1 Dorea sp. AGR2135 G593DRAFT_scaffold00019.19_C, whole genome shotgun sequence (64906 bp)
Overview 1 RT 1: 11519-18126 bp Neighborhood of RT #1 [11519, 18224] MacB_PCD SalY SalY RVT-GII GIIM COG3666 DDE_Tnp_1_6 HTH_MARR Feature: gene Location: 11519-13984 bp Feature: domain Description: MacB_PCD Location: 11594-12170 bp Feature: domain Description: MacB_PCD Location: 11594-12 170 bp Feature: domain Description: SalY Location: 12299-12722 bp Feature: domain Description: SalY Location: 12 2 99-12 72 2 bp Feature: domain Description: SalY Location: 13457-13976 bp Feature: domain Description: SalY Location: 13457-13976 bp Feature: gene Location: 14493-14636 bp Feature: gene Location: 14623-15906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14833-15448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14833-15448 bp Feature: domain Description: GIIM Note: maturase Location: 15508-15730 bp Feature: domain Description: GIIM Note: maturase Location: 15508-15730 bp Feature: gene Location: 16010-17425 bp Feature: domain Description: COG3666 Location: 16049-16472 bp Feature: domain Description: COG3666 Location: 16049-16472 bp Feature: domain Description: DDE_Tnp_1_6 Location: 17021-17372 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1702 1-17372 bp Feature: gene Location: 17730-18224 bp Feature: domain Description: HTH_MARR Location: 17868-18126 bp Feature: domain Description: HTH_MARR Location: 17868-1812 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MacB_PCD (pfam12704), SalY (COG0577), RVT-GII, GIIM (pfam08388), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), HTH_MARR (smart00347)

Seq: ATVU01000042.1 Dorea sp. AGR2135 G593DRAFT_scaffold00042.42_C, whole genome shotgun sequence (20108 bp)
Overview 1 RT 1: 15872-19375 bp Neighborhood of RT #1 [15872, 19914] RVT-GII BcsQ ParB_N_like Feature: gene Location: 15872-16066 bp Feature: gene Location: 16395-16730 bp Feature: gene Location: 17740-18267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18001-18259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18001-18259 bp Feature: gene Location: 18336-19028 bp Feature: domain Description: BcsQ Location: 18342-19020 bp Feature: domain Description: BcsQ Location: 183 42-19020 bp Feature: gene Location: 19018-19914 bp Feature: domain Description: ParB_N_like Location: 19126-19375 bp Feature: domain Description: ParB_N_like Location: 19126-193 75 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, BcsQ (COG1192), ParB_N_like (cd16411)