myRT

myRT report for GCA_000421285.1_ASM42128v1

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Seq: ATWO01000001.1 Desulfotignum balticum DSM 7044 K365DRAFT_scaffold00001.1_C, whole genome shotgun sequence (4821415 bp)
Overview 1 RT 1: 118209-121918 bp 2 RT 2: 488404-493286 bp 3 RT 3: 1230617-1235835 bp 4 RT 4: 1744193-1747541 bp 5 RT 5: 2508724-2512102 bp Neighborhood of RT #1 [118209, 121918] Avd_like RVT-DGRs Neighborhood of RT #2 [488404, 493286] RVT_N RVT-GII GIIM Neighborhood of RT #3 [1230617, 1235981] VapC RVT-Retrons DUF2889 Neighborhood of RT #4 [1744193, 1747768] RVT-GII RVT-GII GIIM Acetyltransf_1 Y2_Tnp Neighborhood of RT #5 [2508724, 2512377] RVT_N RVT-GII GIIM RimL DDE_Tnp_1 Feature: gene Location: 118209-119417 bp Feature: gene Location: 119472-119807 bp Feature: domain Description: Avd_like Location: 119493-119796 bp Feature: domain Description: Avd_like Location: 1 1 9493-1 1 9796 bp Feature: gene Location: 120105-121130 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 120309-120987 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 20309-1 20987 bp Feature: gene Location: 121222-121467 bp Feature: gene Location: 121523-121918 bp Feature: gene Location: 488404-488958 bp Feature: gene Location: 489041-490051 bp Feature: gene Location: 489966-491417 bp Feature: domain Description: RVT_N Location: 490017-490260 bp Feature: domain Description: RVT_N Location: 49001 7-490260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 490305-490929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 490305-490929 bp Feature: domain Description: GIIM Note: maturase Location: 490980-491214 bp Feature: domain Description: GIIM Note: maturase Location: 490980-491 21 4 bp Feature: gene Location: 491672-491827 bp Feature: gene Location: 492048-493286 bp Feature: gene Location: 1230617-1231024 bp Feature: domain Description: VapC Location: 1230629-1230992 bp Feature: domain Description: VapC Location: 1 230629-1 230992 bp Feature: gene Location: 1231263-1231514 bp Feature: gene Location: 1232324-1233478 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1232573-1233203 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 232573-1 233203 bp Feature: gene Location: 1233673-1234866 bp Feature: gene Location: 1235424-1235981 bp Feature: domain Description: DUF2889 Location: 1235463-1235835 bp Feature: domain Description: DUF2889 Location: 1 235463-1 235835 bp Feature: gene Location: 1744193-1744390 bp Feature: gene Location: 1744406-1744741 bp Feature: gene Location: 1744740-1745894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1745016-1745193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 74501 6-1 7451 93 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1745199-1745445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7451 99-1 745445 bp Feature: domain Description: GIIM Note: maturase Location: 1745493-1745694 bp Feature: domain Description: GIIM Note: maturase Location: 1 745493-1 745694 bp Feature: gene Location: 1745972-1746436 bp Feature: domain Description: Acetyltransf_1 Location: 1746044-1746362 bp Feature: domain Description: Acetyltransf_1 Location: 1 746044-1 746362 bp Feature: gene Location: 1746836-1747768 bp Feature: domain Description: Y2_Tnp Location: 1746983-1747541 bp Feature: domain Description: Y2_Tnp Location: 1 746983-1 747541 bp Feature: gene Location: 2508724-2509020 bp Feature: gene Location: 2509061-2509192 bp Feature: gene Location: 2509470-2510921 bp Feature: domain Description: RVT_N Location: 2509521-2509764 bp Feature: domain Description: RVT_N Location: 2509521 -2509764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2509809-2510433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2509809-251 0433 bp Feature: domain Description: GIIM Note: maturase Location: 2510484-2510718 bp Feature: domain Description: GIIM Note: maturase Location: 251 0484-251 071 8 bp Feature: gene Location: 2511058-2511567 bp Feature: domain Description: RimL Location: 2511073-2511535 bp Feature: domain Description: RimL Location: 251 1 073-251 1 535 bp Feature: gene Location: 2511646-2512377 bp Feature: domain Description: DDE_Tnp_1 Location: 2511661-2512102 bp Feature: domain Description: DDE_Tnp_1 Location: 251 1 661 -251 21 02 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), VapC (COG1487), RVT-Retrons, DUF2889 (pfam11136), Acetyltransf_1 (pfam00583), Y2_Tnp (pfam04986)
RimL (COG1670), DDE_Tnp_1 (pfam01609)

Seq: ATWO01000003.1 Desulfotignum balticum DSM 7044 K365DRAFT_scaffold00003.3_C, whole genome shotgun sequence (132849 bp)
Overview 1 RT 1: 128570-132765 bp Neighborhood of RT #1 [128570, 132848] BKACE MDR RocR RVT-GII IstB_IS21 INT_RitC_C_like Feature: gene Location: 128570-129418 bp Feature: domain Description: BKACE Location: 128579-129401 bp Feature: domain Description: BKACE Location: 12 8579-12 9401 bp Feature: gene Location: 129415-131613 bp Feature: domain Description: MDR Location: 129826-130531 bp Feature: domain Description: MDR Location: 12 982 6-130531 bp Feature: domain Description: RocR Location: 130681-131608 bp Feature: domain Description: RocR Location: 130681-131608 bp Feature: gene Location: 131757-131903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131781-131901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131781-131901 bp Feature: gene Location: 131830-132270 bp Feature: domain Description: IstB_IS21 Location: 132049-132226 bp Feature: domain Description: IstB_IS2 1 Location: 132 049-132 2 2 6 bp Feature: gene Location: 132333-132848 bp Feature: domain Description: INT_RitC_C_like Location: 132336-132765 bp Feature: domain Description: INT_RitC_C_like Location: 132 336-132 765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BKACE (pfam05853), MDR (cl16912), RocR (COG3829), RVT-GII, IstB_IS21 (pfam01695), INT_RitC_C_like (cd01182)