myRT

myRT report for GCA_000421505.1_ASM42150v1

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Seq: ATXD01000006.1 [Clostridium] methoxybenzovorans SR3 H204DRAFT_scaffold00001.1_C, whole genome shotgun sequence (2259201 bp)
Overview 1 RT 1: 1240149-1243595 bp 2 RT 2: 2058352-2061288 bp 3 RT 3: 2073989-2082167 bp Neighborhood of RT #1 [1240149, 1243651] YhcF RVT-GII GIIM CE4_CtAXE_like Neighborhood of RT #2 [2058352, 2061288] DUF3852 RVT-GII Intron_maturas2 HNHc Neighborhood of RT #3 [2073989, 2082167] SpoVG YodL RVT-GII Intron_maturas2 HNHc SLH SLH PKD PKD PKD PKD PKD Feature: gene Location: 1240149-1240559 bp Feature: domain Description: YhcF Location: 1240188-1240548 bp Feature: domain Description: YhcF Location: 1 2401 88-1 240548 bp Feature: gene Location: 1240568-1240723 bp Feature: gene Location: 1240791-1242209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1241148-1241763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 241 1 48-1 241 763 bp Feature: domain Description: GIIM Note: maturase Location: 1241820-1242042 bp Feature: domain Description: GIIM Note: maturase Location: 1 241 820-1 242042 bp Feature: gene Location: 1242336-1242626 bp Feature: gene Location: 1242692-1243651 bp Feature: domain Description: CE4_CtAXE_like Location: 1243058-1243595 bp Feature: domain Description: CE4_CtAXE_like Location: 1 243058-1 243595 bp Feature: gene Location: 2058352-2058756 bp Feature: gene Location: 2058761-2058967 bp Feature: domain Description: DUF3852 Location: 2058863-2058959 bp Feature: domain Description: DUF3852 Location: 2058863-2058959 bp Feature: gene Location: 2058971-2060788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2059235-2060057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2059235-2060057 bp Feature: domain Description: Intron_maturas2 Location: 2060132-2060456 bp Feature: domain Description: Intron_maturas2 Location: 20601 32-2060456 bp Feature: domain Description: HNHc Note: nucleases Location: 2060609-2060759 bp Feature: domain Description: HNHc Note: nucleases Location: 2060609-2060759 bp Feature: gene Location: 2060847-2060990 bp Feature: gene Location: 2061118-2061288 bp Feature: gene Location: 2073989-2074324 bp Feature: domain Description: SpoVG Location: 2074019-2074253 bp Feature: domain Description: SpoVG Location: 207401 9-2074253 bp Feature: gene Location: 2074385-2075047 bp Feature: domain Description: YodL Location: 2074715-2075000 bp Feature: domain Description: YodL Location: 207471 5-2075000 bp Feature: gene Location: 2075131-2076945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2075413-2076205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 207541 3-2076205 bp Feature: domain Description: Intron_maturas2 Location: 2076370-2076586 bp Feature: domain Description: Intron_maturas2 Location: 2076370-2076586 bp Feature: domain Description: HNHc Note: nucleases Location: 2076748-2076922 bp Feature: domain Description: HNHc Note: nucleases Location: 2076748-2076922 bp Feature: gene Location: 2077465-2081526 bp Feature: domain Description: SLH Location: 2077675-2077801 bp Feature: domain Description: SLH Location: 2077675-2077801 bp Feature: domain Description: SLH Location: 2077879-2077996 bp Feature: domain Description: SLH Location: 2077879-2077996 bp Feature: domain Description: PKD Location: 2078392-2078485 bp Feature: domain Description: PKD Location: 2078392-2078485 bp Feature: domain Description: PKD Location: 2079076-2079313 bp Feature: domain Description: PKD Location: 2079076-207931 3 bp Feature: domain Description: PKD Location: 2079949-2080123 bp Feature: domain Description: PKD Location: 2079949-20801 23 bp Feature: domain Description: PKD Location: 2080774-2080921 bp Feature: domain Description: PKD Location: 2080774-2080921 bp Feature: domain Description: PKD Location: 2080978-2081071 bp Feature: domain Description: PKD Location: 2080978-2081 071 bp Feature: gene Location: 2081580-2082167 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhcF (COG1725), RVT-GII, GIIM (pfam08388), CE4_CtAXE_like (cd10954), DUF3852 (pfam12963), Intron_maturas2 (pfam01348), HNHc (smart00507), SpoVG (pfam04026), YodL (pfam14191), SLH (pfam00395)
PKD (smart00089)

Seq: ATXD01000007.1 [Clostridium] methoxybenzovorans SR3 H204DRAFT_scaffold00002.2_C, whole genome shotgun sequence (1607802 bp)
Overview 1 RT 1: 1084012-1087057 bp Neighborhood of RT #1 [1084012, 1087057] Avd_like RVT-DGRs Feature: gene Location: 1084012-1084434 bp Feature: domain Description: Avd_like Location: 1084099-1084408 bp Feature: domain Description: Avd_like Location: 1084099-1084408 bp Feature: gene Location: 1084463-1084732 bp Feature: gene Location: 1084789-1085904 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1085032-1085758 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1085032 -1085758 bp Feature: gene Location: 1085969-1086373 bp Feature: gene Location: 1086686-1087057 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: ATXD01000009.1 [Clostridium] methoxybenzovorans SR3 H204DRAFT_scaffold00004.4_C, whole genome shotgun sequence (752290 bp)
Overview 1 RT 1: 79998-86035 bp 2 RT 2: 91021-97089 bp 3 RT 3: 633219-639147 bp Neighborhood of RT #1 [79998, 86061] FucI RVT-GII GIIM RpiR PTS-II-BC-sucr Neighborhood of RT #2 [91021, 97424] DUF4314 RAYT RVT-GII GIIM VirB4 VirB4 Amidoligase_2 Neighborhood of RT #3 [633219, 639164] PRK08673 RVT-Retrons YesN YesM Feature: gene Location: 79998-81521 bp Feature: domain Description: FucI Location: 80046-81510 bp Feature: domain Description: FucI Location: 80046-81510 bp Feature: gene Location: 81544-81957 bp Feature: gene Location: 82006-83424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82363-82978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823 63 -82978 bp Feature: domain Description: GIIM Note: maturase Location: 83035-83257 bp Feature: domain Description: GIIM Note: maturase Location: 83 03 5-83 257 bp Feature: gene Location: 83713-84510 bp Feature: domain Description: RpiR Location: 83716-84379 bp Feature: domain Description: RpiR Location: 83 716-843 79 bp Feature: gene Location: 84670-86061 bp Feature: domain Description: PTS-II-BC-sucr Location: 84682-86035 bp Feature: domain Description: PTS-II-BC-sucr Location: 84682-8603 5 bp Feature: gene Location: 91021-91743 bp Feature: domain Description: DUF4314 Location: 91036-91237 bp Feature: domain Description: DUF43 14 Location: 9103 6-9123 7 bp Feature: gene Location: 91929-92402 bp Feature: domain Description: RAYT Location: 91941-92322 bp Feature: domain Description: RAYT Location: 91941-923 22 bp Feature: gene Location: 93108-94391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93318-93933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 3 18-93 93 3 bp Feature: domain Description: GIIM Note: maturase Location: 93993-94206 bp Feature: domain Description: GIIM Note: maturase Location: 93 993 -94206 bp Feature: gene Location: 94508-96334 bp Feature: domain Description: VirB4 Location: 95171-95420 bp Feature: domain Description: VirB4 Location: 95171-95420 bp Feature: domain Description: VirB4 Location: 95741-96254 bp Feature: domain Description: VirB4 Location: 95741-96254 bp Feature: gene Location: 96372-97424 bp Feature: domain Description: Amidoligase_2 Location: 96384-97089 bp Feature: domain Description: Amidoligase_2 Location: 963 84-97089 bp Feature: gene Location: 633219-634235 bp Feature: domain Description: PRK08673 Location: 633225-634221 bp Feature: domain Description: PRK08673 Location: 63 3 225-63 4221 bp Feature: gene Location: 634470-634610 bp Feature: gene Location: 634747-635745 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 634924-635479 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63 4924-63 5479 bp Feature: gene Location: 635745-637334 bp Feature: domain Description: YesN Location: 635766-637314 bp Feature: domain Description: YesN Location: 63 5766-63 73 14 bp Feature: gene Location: 637350-639164 bp Feature: domain Description: YesM Location: 637968-639147 bp Feature: domain Description: YesM Location: 63 7968-63 9147 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FucI (COG2407), RVT-GII, GIIM (pfam08388), RpiR (COG1737), PTS-II-BC-sucr (TIGR01996), DUF4314 (pfam14192), RAYT (COG1943), VirB4 (COG3451), Amidoligase_2 (pfam12224), PRK08673 (3-deoxy-7-phosphoheptulonate synthase; Reviewed)
RVT-Retrons, YesN (COG4753), YesM (COG2972)

Seq: ATXD01000012.1 [Clostridium] methoxybenzovorans SR3 H204DRAFT_scaffold00007.7_C, whole genome shotgun sequence (34424 bp)
Overview 1 RT 1: 8062-13520 bp Neighborhood of RT #1 [8062, 13520] RVT-DGRs Feature: gene Location: 8062-9039 bp Feature: gene Location: 9274-9552 bp Feature: gene Location: 9497-10666 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9758-10451 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9758-104 51 bp Feature: gene Location: 10906-13008 bp Feature: gene Location: 13005-13520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs