myRT

myRT report for GCA_000422325.1_ASM42232v1

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Seq: KE383818.1 Marinospirillum minutulum DSM 6287 genomic scaffold H571DRAFT_scaffold00001.1, whole genome shotgun sequence (840863 bp)
Overview 1 RT 1: 411142-416062 bp Neighborhood of RT #1 [411142, 416151] COG2865 RMtype1_S_TRD-CR_like RMtype1_S_TRD-CR_like RVT-AbiP2 HigB Feature: gene Location: 411142-412323 bp Feature: domain Description: COG2865 Location: 411163-412318 bp Feature: domain Description: COG2865 Location: 41 1 1 63-41 231 8 bp Feature: gene Location: 412423-413889 bp Feature: domain Description: RMtype1_S_TRD-CR_like Location: 412498-413008 bp Feature: domain Description: RMtype1 _S_TRD-CR_like Location: 41 2498-41 3008 bp Feature: domain Description: RMtype1_S_TRD-CR_like Location: 413329-413731 bp Feature: domain Description: RMtype1 _S_TRD-CR_like Location: 41 3329-41 3731 bp Feature: gene Location: 413886-415391 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 414330-414783 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 41 4330-41 4783 bp Feature: gene Location: 415449-415592 bp Feature: gene Location: 415822-416151 bp Feature: domain Description: HigB Location: 415825-416062 bp Feature: domain Description: HigB Location: 41 5825-41 6062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2865 (Predicted transcriptional regulator, contains HTH domain ), RMtype1_S_TRD-CR_like (cl38903), RVT-AbiP2, HigB (COG4680)

Seq: AULO01000011.1 Marinospirillum minutulum DSM 6287 H571DRAFT_scaffold00005.5_C, whole genome shotgun sequence (350278 bp)
Overview 1 RT 1: 2-5390 bp 2 RT 2: 170463-177177 bp Neighborhood of RT #1 [2, 5482] DDE_Tnp_1_6 45_DOPA_Dioxygenase RVT-UG9 PRK14975 Acetyltransf_1 Neighborhood of RT #2 [170463, 177353] YeeA HsdM RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 2-517 bp Feature: domain Description: DDE_Tnp_1_6 Location: 92-491 bp Feature: domain Description: DDE_Tnp_1_6 Location: 92 -491 bp Feature: gene Location: 735-1532 bp Feature: domain Description: 45_DOPA_Dioxygenase Location: 756-1500 bp Feature: domain Description: 45_DOPA_Dioxygenase Location: 756-1500 bp Feature: gene Location: 1680-3332 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 1902-2535 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 1902 -2 535 bp Feature: gene Location: 3517-4881 bp Feature: domain Description: PRK14975 Location: 3829-4819 bp Feature: domain Description: PRK14975 Location: 382 9-4819 bp Feature: gene Location: 4991-5482 bp Feature: domain Description: Acetyltransf_1 Location: 5090-5390 bp Feature: domain Description: Acetyltransf_1 Location: 5090-5390 bp Feature: gene Location: 170463-173123 bp Feature: domain Description: YeeA Location: 170571-171186 bp Feature: domain Description: YeeA Location: 170571-171186 bp Feature: domain Description: HsdM Location: 171321-171573 bp Feature: domain Description: HsdM Location: 17132 1-171573 bp Feature: gene Location: 173167-173925 bp Feature: gene Location: 174267-175199 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 174369-174960 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 174369-174960 bp Feature: gene Location: 175192-176679 bp Feature: domain Description: COG3950 Location: 175390-176617 bp Feature: domain Description: COG3950 Location: 175390-176617 bp Feature: gene Location: 176688-177353 bp Feature: domain Description: TIGR02646 Location: 176751-177177 bp Feature: domain Description: TIGR02 646 Location: 176751-177177 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_6 (pfam13751), 45_DOPA_Dioxygenase (cd07363), RVT-UG9, PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), Acetyltransf_1 (pfam00583), YeeA (COG1002), HsdM (COG0286), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: AULO01000013.1 Marinospirillum minutulum DSM 6287 H571DRAFT_scaffold00007.7_C, whole genome shotgun sequence (161286 bp)
Overview 1 RT 1: 136915-143577 bp Neighborhood of RT #1 [136915, 143591] cysS PRK05347 RVT_N RVT-GII YkfC HNHc PRK10791 Feature: gene Location: 136915-138336 bp Feature: domain Description: cysS Location: 136933-138328 bp Feature: domain Description: cysS Location: 13 693 3 -13 83 28 bp Feature: gene Location: 138338-140023 bp Feature: domain Description: PRK05347 Location: 138362-140003 bp Feature: domain Description: PRK053 47 Location: 13 83 62-140003 bp Feature: gene Location: 140152-141927 bp Feature: domain Description: RVT_N Location: 140209-140452 bp Feature: domain Description: RVT_N Location: 140209-140452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140500-141151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140500-141151 bp Feature: domain Description: YkfC Location: 141373-141475 bp Feature: domain Description: YkfC Location: 1413 73 -141475 bp Feature: domain Description: HNHc Note: nucleases Location: 141676-141841 bp Feature: domain Description: HNHc Note: nucleases Location: 141676-141841 bp Feature: gene Location: 142370-142627 bp Feature: gene Location: 143073-143591 bp Feature: domain Description: PRK10791 Location: 143097-143577 bp Feature: domain Description: PRK10791 Location: 143 097-143 577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cysS (TIGR00435), PRK05347 (glutaminyl-tRNA synthetase; Provisional), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), PRK10791 (peptidylprolyl isomerase B)