myRT

myRT report for GCA_000422425.1_ASM42242v1

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Seq: KE383828.1 Oceanospirillum beijerinckii DSM 7166 genomic scaffold H579DRAFT_scaffold00001.1, whole genome shotgun sequence (301566 bp)
Overview 1 RT 1: 214394-221858 bp 2 RT 2: 273028-277536 bp Neighborhood of RT #1 [214394, 221896] TIGR03986 CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Neighborhood of RT #2 [273028, 277536] HipB HTH_19 RVT-Retrons Feature: gene Location: 214394-216628 bp Feature: domain Description: TIGR03986 Location: 214574-216404 bp Feature: domain Description: TIGR03986 Location: 21 4574-21 6404 bp Feature: gene Location: 216653-218728 bp Feature: gene Location: 218747-221563 bp Feature: domain Description: CRISPR_Cas6 Location: 219209-219602 bp Feature: domain Description: CRISPR_Cas6 Location: 21 9209-21 9602 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 219836-220439 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 21 9836-220439 bp Feature: domain Description: Cas1_I-II-III Location: 220610-221528 bp Feature: domain Description: Cas1 _I-II-III Location: 22061 0-221 528 bp Feature: gene Location: 221603-221896 bp Feature: domain Description: Cas2_I_II_III Location: 221618-221858 bp Feature: domain Description: Cas2_I_II_III Location: 221 61 8-221 858 bp Feature: gene Location: 273028-273516 bp Feature: domain Description: HipB Location: 273073-273388 bp Feature: domain Description: HipB Location: 273073-273388 bp Feature: gene Location: 273756-274091 bp Feature: domain Description: HTH_19 Location: 273777-273963 bp Feature: domain Description: HTH_1 9 Location: 273777-273963 bp Feature: gene Location: 274272-275444 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 274530-275178 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 274530-2751 78 bp Feature: gene Location: 275726-276949 bp Feature: gene Location: 277252-277536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR03986 (CRISPR-associated protein), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), HipB (COG1396), HTH_19 (pfam12844), RVT-Retrons

Seq: KE383834.1 Oceanospirillum beijerinckii DSM 7166 genomic scaffold H579DRAFT_scaffold00033.33, whole genome shotgun sequence (60575 bp)
Overview 1 RT 1: 40233-46634 bp Neighborhood of RT #1 [40233, 46696] ACAD_fadE6_17_26 RVT-UG8 RVT-UG3 DUF4351 Transposase_31 YadD Feature: gene Location: 40233-41438 bp Feature: domain Description: ACAD_fadE6_17_26 Location: 40257-41409 bp Feature: domain Description: ACAD_fadE6_17_2 6 Location: 402 57-41409 bp Feature: gene Location: 41454-41582 bp Feature: gene Location: 41762-43705 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 42257-42704 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 42 2 57-42 704 bp Feature: gene Location: 43698-44879 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 43986-44448 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 43986-44448 bp Feature: gene Location: 45283-45552 bp Feature: domain Description: DUF4351 Location: 45376-45538 bp Feature: domain Description: DUF4351 Location: 45376-45538 bp Feature: gene Location: 45626-46696 bp Feature: domain Description: Transposase_31 Location: 45668-46322 bp Feature: domain Description: Transposase_31 Location: 45668-4632 2 bp Feature: domain Description: YadD Location: 46439-46634 bp Feature: domain Description: YadD Location: 46439-46634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ACAD_fadE6_17_26 (cd01152), RVT-UG8, RVT-UG3, DUF4351 (pfam14261), Transposase_31 (pfam04754), YadD (COG5464)

Seq: AULT01000052.1 Oceanospirillum beijerinckii DSM 7166 H579DRAFT_scaffold00044.44_C, whole genome shotgun sequence (44469 bp)
Overview 1 RT 1: 39412-41898 bp Neighborhood of RT #1 [39412, 41900] HTH_3 RVT-Retrons PRK13725 VagC Feature: gene Location: 39412-39645 bp Feature: gene Location: 39695-39988 bp Feature: domain Description: HTH_3 Location: 39725-39875 bp Feature: domain Description: HTH_3 Location: 3 9725-3 9875 bp Feature: gene Location: 40056-40919 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40110-40680 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40110-40680 bp Feature: gene Location: 41263-41667 bp Feature: domain Description: PRK13725 Location: 41266-41656 bp Feature: domain Description: PRK13 725 Location: 41266-41656 bp Feature: gene Location: 41667-41900 bp Feature: domain Description: VagC Location: 41679-41898 bp Feature: domain Description: VagC Location: 41679-41898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_3 (pfam01381), RVT-Retrons, PRK13725 (tRNA(fMet)-specific endonuclease VapC), VagC (COG4456)

Seq: AULT01000076.1 Oceanospirillum beijerinckii DSM 7166 H579DRAFT_scaffold00067.67_C, whole genome shotgun sequence (11045 bp)
Overview 1 RT 1: 7478-10935 bp Neighborhood of RT #1 [7478, 10935] DUF2007 NTP-PPase_iMazG RVT-GII GIIM Feature: gene Location: 7478-7960 bp Feature: domain Description: DUF2007 Location: 7499-7637 bp Feature: domain Description: DUF2007 Location: 74 99-7637 bp Feature: gene Location: 8121-8405 bp Feature: domain Description: NTP-PPase_iMazG Location: 8130-8397 bp Feature: domain Description: NTP-PPase_iMazG Location: 8130-8397 bp Feature: gene Location: 9014-10396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9341-9959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934 1-9959 bp Feature: domain Description: GIIM Note: maturase Location: 10001-10226 bp Feature: domain Description: GIIM Note: maturase Location: 10001-10226 bp Feature: gene Location: 10465-10935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2007 (pfam09413), NTP-PPase_iMazG (cd11536), RVT-GII, GIIM (pfam08388)