myRT

myRT report for GCA_000422905.1_ASM42290v1

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Seq: AUGY01000015.1 Paenibacillus alginolyticus DSM 5050 = NBRC 15375 strain DSM 5050 G519DRAFT_scaffold00012.12_C, whole genome shotgun sequence (115185 bp)
Overview 1 RT 1: 111013-115080 bp Neighborhood of RT #1 [111013, 115184] SRPBCC_CalC_Aha1-like UvrA UvrA RVT-GII HTH_17 Feature: gene Location: 111013-111408 bp Feature: domain Description: SRPBCC_CalC_Aha1-like Location: 111028-111406 bp Feature: domain Description: SRPBCC_CalC_Aha1 -like Location: 1 1 1 028-1 1 1 406 bp Feature: gene Location: 111657-113912 bp Feature: domain Description: UvrA Location: 111672-112038 bp Feature: domain Description: UvrA Location: 1 1 1 672-1 1 2038 bp Feature: domain Description: UvrA Location: 112044-113907 bp Feature: domain Description: UvrA Location: 1 1 2044-1 1 3907 bp Feature: gene Location: 114574-114894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114802-114850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 4802-1 1 4850 bp Feature: gene Location: 114900-115184 bp Feature: domain Description: HTH_17 Location: 114990-115080 bp Feature: domain Description: HTH_1 7 Location: 1 1 4990-1 1 5080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRPBCC_CalC_Aha1-like (cd07814), UvrA (COG0178), RVT-GII, HTH_17 (pfam12728)

Seq: AUGY01000024.1 Paenibacillus alginolyticus DSM 5050 = NBRC 15375 strain DSM 5050 G519DRAFT_scaffold00021.21_C, whole genome shotgun sequence (91733 bp)
Overview 1 RT 1: 10046-15258 bp 2 RT 2: 35763-44578 bp Neighborhood of RT #1 [10046, 15258] COG3547 COG3666 DDE_Tnp_1_6 RVT-GII GIIM Neighborhood of RT #2 [35763, 44578] MoxR RVT_N RVT-GII GIIM HNHc RVT-GII Feature: gene Location: 10046-11347 bp Feature: domain Description: COG3547 Location: 10112-11171 bp Feature: domain Description: COG3547 Location: 10112 -11171 bp Feature: gene Location: 11619-13082 bp Feature: domain Description: COG3666 Location: 11628-12090 bp Feature: domain Description: COG3666 Location: 1162 8-12 090 bp Feature: domain Description: DDE_Tnp_1_6 Location: 12636-12984 bp Feature: domain Description: DDE_Tnp_1_6 Location: 12 636-12 984 bp Feature: gene Location: 13199-14461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13394-14015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13394-14015 bp Feature: domain Description: GIIM Note: maturase Location: 14066-14273 bp Feature: domain Description: GIIM Note: maturase Location: 14066-142 73 bp Feature: gene Location: 14474-14929 bp Feature: gene Location: 15001-15258 bp Feature: gene Location: 35763-37223 bp Feature: domain Description: MoxR Location: 36408-36900 bp Feature: domain Description: MoxR Location: 36408-36900 bp Feature: gene Location: 37320-38117 bp Feature: gene Location: 38224-39933 bp Feature: domain Description: RVT_N Location: 38272-38515 bp Feature: domain Description: RVT_N Location: 382 72 -38515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38572-39238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38572 -392 38 bp Feature: domain Description: GIIM Note: maturase Location: 39301-39535 bp Feature: domain Description: GIIM Note: maturase Location: 39301-39535 bp Feature: domain Description: HNHc Note: nucleases Location: 39739-39907 bp Feature: domain Description: HNHc Note: nucleases Location: 39739-39907 bp Feature: gene Location: 40485-40784 bp Feature: gene Location: 40831-41034 bp Feature: gene Location: 41176-43092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41494-42202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41494-42 2 02 bp Feature: gene Location: 43779-44102 bp Feature: gene Location: 44114-44578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-GII, GIIM (pfam08388), MoxR (COG0714), RVT_N (pfam13655), HNHc (smart00507)

Seq: AUGY01000045.1 Paenibacillus alginolyticus DSM 5050 = NBRC 15375 strain DSM 5050 G519DRAFT_scaffold00041.41_C, whole genome shotgun sequence (68712 bp)
Overview 1 RT 1: 66720-68699 bp Neighborhood of RT #1 [66720, 68699] YdeI YdeI RVT-UNC GIIM GIIM Feature: gene Location: 66720-67001 bp Feature: domain Description: YdeI Location: 66726-66999 bp Feature: domain Description: YdeI Location: 66726-66999 bp Feature: gene Location: 67070-67312 bp Feature: domain Description: YdeI Location: 67073-67289 bp Feature: domain Description: YdeI Location: 67073 -67289 bp Feature: gene Location: 67678-68436 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 67708-67852 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 67708-67852 bp Feature: domain Description: GIIM Note: maturase Location: 67927-68041 bp Feature: domain Description: GIIM Note: maturase Location: 67927-68041 bp Feature: domain Description: GIIM Note: maturase Location: 68125-68215 bp Feature: domain Description: GIIM Note: maturase Location: 68125-68215 bp Feature: gene Location: 68535-68699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdeI (COG4430), RVT-GII/RVT-UG26/RVT-CRISPR/RVT-G2L4(RVT-UNC), GIIM (pfam08388)

Seq: AUGY01000051.1 Paenibacillus alginolyticus DSM 5050 = NBRC 15375 strain DSM 5050 G519DRAFT_scaffold00047.47_C, whole genome shotgun sequence (56760 bp)
Overview 1 RT 1: 1-2701 bp Neighborhood of RT #1 [1, 2784] RVT-GII solA HutD Feature: gene Location: 1-150 bp Feature: gene Location: 242-874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437-860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 37-860 bp Feature: gene Location: 1002-2135 bp Feature: domain Description: solA Location: 1008-2133 bp Feature: domain Description: solA Location: 1008-2133 bp Feature: gene Location: 2161-2784 bp Feature: domain Description: HutD Location: 2209-2701 bp Feature: domain Description: HutD Location: 2209-2701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, solA (PRK11259), HutD (pfam05962)

Seq: AUGY01000092.1 Paenibacillus alginolyticus DSM 5050 = NBRC 15375 strain DSM 5050 G519DRAFT_scaffold00088.88_C, whole genome shotgun sequence (32597 bp)
Overview 1 RT 1: 4285-15807 bp Neighborhood of RT #1 [4285, 15807] DEXHc_Snf DEXDc_RapA RVT-GII SNF2_N SF2_C_SNF RVT-GII GIIM HNHc Feature: gene Location: 4285-5292 bp Feature: domain Description: DEXHc_Snf Location: 4660-4852 bp Feature: domain Description: DEXHc_Snf Location: 4660-485 2 bp Feature: domain Description: DEXDc_RapA Location: 5128-5287 bp Feature: domain Description: DEXDc_RapA Location: 5 128-5 287 bp Feature: gene Location: 5541-5684 bp Feature: gene Location: 5903-7906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6341-7049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6341-7049 bp Feature: gene Location: 8146-9306 bp Feature: domain Description: SNF2_N Location: 8152-8671 bp Feature: domain Description: SNF2_N Location: 815 2-8671 bp Feature: domain Description: SF2_C_SNF Location: 8689-9094 bp Feature: domain Description: SF2_C_SNF Location: 8689-9094 bp Feature: gene Location: 9322-9657 bp Feature: gene Location: 9658-10797 bp Feature: gene Location: 11967-13844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12267-12969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12267-12969 bp Feature: domain Description: GIIM Note: maturase Location: 13065-13269 bp Feature: domain Description: GIIM Note: maturase Location: 13065 -13269 bp Feature: domain Description: HNHc Note: nucleases Location: 13593-13761 bp Feature: domain Description: HNHc Note: nucleases Location: 135 93-13761 bp Feature: gene Location: 14180-15205 bp Feature: gene Location: 15412-15807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), DEXDc_RapA (cd18011), RVT-GII, SNF2_N (pfam00176), SF2_C_SNF (cd18793), GIIM (pfam08388), HNHc (smart00507)

Seq: AUGY01000126.1 Paenibacillus alginolyticus DSM 5050 = NBRC 15375 strain DSM 5050 G519DRAFT_scaffold00119.119_C, whole genome shotgun sequence (17687 bp)
Overview 1 RT 1: 1-1303 bp Neighborhood of RT #1 [1, 1305] RVT-GII MviM DoxX Feature: gene Location: 1-375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40-313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40-313 bp Feature: gene Location: 393-860 bp Feature: domain Description: MviM Location: 399-849 bp Feature: domain Description: MviM Location: 399-849 bp Feature: gene Location: 898-1305 bp Feature: domain Description: DoxX Location: 907-1303 bp Feature: domain Description: DoxX Location: 907-1303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, MviM (COG0673), DoxX (pfam07681)

Seq: AUGY01000128.1 Paenibacillus alginolyticus DSM 5050 = NBRC 15375 strain DSM 5050 G519DRAFT_scaffold00121.121_C, whole genome shotgun sequence (16899 bp)
Overview 1 RT 1: 16-2657 bp Neighborhood of RT #1 [16, 2677] DUF5372 RVT-GII GIIM ligB Feature: gene Location: 16-294 bp Feature: domain Description: DUF5372 Location: 64-271 bp Feature: domain Description: DUF537 2 Location: 64-27 1 bp Feature: gene Location: 309-1334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315-885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315-885 bp Feature: domain Description: GIIM Note: maturase Location: 936-1143 bp Feature: domain Description: GIIM Note: maturase Location: 936-1143 bp Feature: gene Location: 1604-1750 bp Feature: gene Location: 1772-2677 bp Feature: domain Description: ligB Location: 1805-2657 bp Feature: domain Description: ligB Location: 1805-2657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5372 (pfam17342), RVT-GII, GIIM (pfam08388), ligB (PRK08097)

Seq: AUGY01000135.1 Paenibacillus alginolyticus DSM 5050 = NBRC 15375 strain DSM 5050 G519DRAFT_scaffold00128.128_C, whole genome shotgun sequence (15656 bp)
Overview 1 RT 1: 1-2628 bp Neighborhood of RT #1 [1, 2630] GIIM RVT-GII HNHc PRK09124 Feature: gene Location: 1-303 bp Feature: domain Description: GIIM Note: maturase Location: 4-217 bp Feature: domain Description: GIIM Note: maturase Location: 4-217 bp Feature: gene Location: 356-1336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383-533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38 3-533 bp Feature: domain Description: HNHc Note: nucleases Location: 1088-1205 bp Feature: domain Description: HNHc Note: nucleases Location: 108 8 -1205 bp Feature: gene Location: 1406-1537 bp Feature: gene Location: 1725-2630 bp Feature: domain Description: PRK09124 Location: 1728-2628 bp Feature: domain Description: PRK09124 Location: 1728 -2628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, HNHc (smart00507), PRK09124 (ubiquinone-dependent pyruvate dehydrogenase)

Seq: AUGY01000145.1 Paenibacillus alginolyticus DSM 5050 = NBRC 15375 strain DSM 5050 G519DRAFT_scaffold00137.137_C, whole genome shotgun sequence (12479 bp)
Overview 1 RT 1: 10129-12403 bp Neighborhood of RT #1 [10129, 12420] HTH_ARSR BsCS-I_like RVT-GII Feature: gene Location: 10129-10464 bp Feature: domain Description: HTH_ARSR Location: 10177-10378 bp Feature: domain Description: HTH_ARSR Location: 10177-10378 bp Feature: gene Location: 10641-11750 bp Feature: domain Description: BsCS-I_like Location: 10659-11727 bp Feature: domain Description: BsCS-I_like Location: 10659 -11727 bp Feature: gene Location: 12178-12420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12193-12403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1219 3-12403 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), BsCS-I_like (cd06109), RVT-GII

Seq: AUGY01000203.1 Paenibacillus alginolyticus DSM 5050 = NBRC 15375 strain DSM 5050 G519DRAFT_scaffold00193.193_C, whole genome shotgun sequence (3239 bp)
Overview 1 RT 1: 40-1778 bp Neighborhood of RT #1 [40, 1846] RVT-GII Acetyltransf_1 Feature: gene Location: 40-753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121-571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121-571 bp Feature: gene Location: 893-1261 bp Feature: gene Location: 1424-1846 bp Feature: domain Description: Acetyltransf_1 Location: 1565-1778 bp Feature: domain Description: Acetyltransf_1 Location: 1565-1778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Acetyltransf_1 (pfam00583)