myRT

myRT report for GCA_000423565.1_ASM42356v1

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Seq: KE384036.1 Runella zeae DSM 19591 genomic scaffold G563DRAFT_scaffold00001.1, whole genome shotgun sequence (546582 bp)
Overview 1 RT 1: 533028-540105 bp Neighborhood of RT #1 [533028, 540105] Phage_int_SAM_5 INTN1_C_like COG4814 EstA Ig_2 Por_Secre_tail RVT-AbiP2 AmpC Feature: gene Location: 533028-534275 bp Feature: domain Description: Phage_int_SAM_5 Location: 533364-533667 bp Feature: domain Description: Phage_int_SAM_5 Location: 533364-533667 bp Feature: domain Description: INTN1_C_like Location: 533730-534180 bp Feature: domain Description: INTN1 _C_like Location: 533730-5341 80 bp Feature: gene Location: 534396-536855 bp Feature: domain Description: COG4814 Location: 534489-534567 bp Feature: domain Description: COG481 4 Location: 534489-534567 bp Feature: domain Description: EstA Location: 534783-535047 bp Feature: domain Description: EstA Location: 534783-535047 bp Feature: domain Description: Ig_2 Location: 535944-536106 bp Feature: domain Description: Ig_2 Location: 535944-5361 06 bp Feature: domain Description: Por_Secre_tail Location: 536643-536850 bp Feature: domain Description: Por_Secre_tail Location: 536643-536850 bp Feature: gene Location: 536917-538455 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 537370-537826 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 537370-537826 bp Feature: gene Location: 538673-539704 bp Feature: domain Description: AmpC Location: 538811-539660 bp Feature: domain Description: AmpC Location: 53881 1 -539660 bp Feature: gene Location: 539836-540105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), COG4814 (Uncharacterized protein with an alpha/beta hydrolase fold ), EstA (COG1075), Ig_2 (pfam13895), Por_Secre_tail (TIGR04183), RVT-AbiP2, AmpC (COG1680)

Seq: AUIF01000010.1 Runella zeae DSM 19591 G563DRAFT_scaffold00005.5_C, whole genome shotgun sequence (357572 bp)
Overview 1 RT 1: 341618-348958 bp Neighborhood of RT #1 [341618, 349131] SWIM DUF4034 TPR_1 RVT-Retrons AmpC MviM Feature: gene Location: 341618-343273 bp Feature: domain Description: SWIM Location: 343142-343229 bp Feature: domain Description: SWIM Location: 343142 -3432 2 9 bp Feature: gene Location: 343286-344257 bp Feature: domain Description: DUF4034 Location: 343457-343748 bp Feature: domain Description: DUF4034 Location: 343457-343748 bp Feature: domain Description: TPR_1 Location: 343748-343817 bp Feature: domain Description: TPR_1 Location: 343748-343817 bp Feature: gene Location: 344602-346095 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 345148-345763 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 345148-345763 bp Feature: gene Location: 346131-347660 bp Feature: domain Description: AmpC Location: 346242-347310 bp Feature: domain Description: AmpC Location: 3462 42 -347310 bp Feature: gene Location: 347788-349131 bp Feature: domain Description: MviM Location: 347911-348958 bp Feature: domain Description: MviM Location: 347911-348958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SWIM (pfam04434), DUF4034 (pfam13226), TPR_1 (pfam00515), RVT-Retrons, AmpC (COG1680), MviM (COG0673)

Seq: AUIF01000011.1 Runella zeae DSM 19591 G563DRAFT_scaffold00006.6_C, whole genome shotgun sequence (339983 bp)
Overview 1 RT 1: 166307-170906 bp Neighborhood of RT #1 [166307, 170953] RVT-Retrons DEXSc_RecD-like recD_rel WYL Feature: gene Location: 166307-166609 bp Feature: gene Location: 166629-167261 bp Feature: gene Location: 167258-168322 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 167459-168029 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 167459-168029 bp Feature: gene Location: 168494-169849 bp Feature: domain Description: DEXSc_RecD-like Location: 168569-169013 bp Feature: domain Description: DEXSc_RecD-like Location: 168569-169013 bp Feature: domain Description: recD_rel Location: 169679-169832 bp Feature: domain Description: recD_rel Location: 169679-16983 2 bp Feature: gene Location: 169955-170953 bp Feature: domain Description: WYL Location: 170402-170906 bp Feature: domain Description: WYL Location: 170402-170906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DEXSc_RecD-like (cd17933), recD_rel (TIGR01448), WYL (pfam13280)

Seq: KE384044.1 Runella zeae DSM 19591 genomic scaffold G563DRAFT_scaffold00013.13, whole genome shotgun sequence (189824 bp)
Overview 1 RT 1: 21633-28521 bp Neighborhood of RT #1 [21633, 28544] PRK08242 RVT-UG2 YafY NlpE_C MscS Feature: gene Location: 21633-22838 bp Feature: domain Description: PRK08242 Location: 21636-22836 bp Feature: domain Description: PRK0824 2 Location: 21636-22836 bp Feature: gene Location: 23169-23723 bp Feature: gene Location: 24031-25677 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 24355-25279 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 24 355-25279 bp Feature: gene Location: 25986-27140 bp Feature: domain Description: YafY Location: 26907-27111 bp Feature: domain Description: YafY Location: 26907-27111 bp Feature: gene Location: 27345-28544 bp Feature: domain Description: NlpE_C Location: 27477-27657 bp Feature: domain Description: NlpE_C Location: 274 77-27657 bp Feature: domain Description: MscS Location: 27813-28521 bp Feature: domain Description: MscS Location: 27813-28521 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08242 (acetyl-CoA C-acetyltransferase), RVT-UG2, YafY (COG2378), NlpE_C (pfam17185), MscS (COG0668)

Seq: KE384045.1 Runella zeae DSM 19591 genomic scaffold G563DRAFT_scaffold00014.14, whole genome shotgun sequence (181967 bp)
Overview 1 RT 1: 60528-64301 bp Neighborhood of RT #1 [60528, 64342] Cmr6_III-B Cas6b_N Cas6b_C RVT-Retrons Cas1_I-II-III Cas2 Feature: gene Location: 60528-61337 bp Feature: domain Description: Cmr6_III-B Location: 60654-61323 bp Feature: domain Description: Cmr6_III-B Location: 6065 4-61323 bp Feature: gene Location: 61340-62053 bp Feature: domain Description: Cas6b_N Location: 61352-61637 bp Feature: domain Description: Cas6b_N Location: 6135 2-61637 bp Feature: domain Description: Cas6b_C Location: 61658-61988 bp Feature: domain Description: Cas6b_C Location: 6165 8-61988 bp Feature: gene Location: 62010-63056 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 62163-62736 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 62163-62736 bp Feature: gene Location: 63058-64041 bp Feature: domain Description: Cas1_I-II-III Location: 63061-64018 bp Feature: domain Description: Cas1_I-II-III Location: 63061-64018 bp Feature: gene Location: 64046-64342 bp Feature: domain Description: Cas2 Location: 64049-64301 bp Feature: domain Description: Cas2 Location: 64049-64301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cmr6_III-B (cd09661), Cas6b_N (pfam17955), Cas6b_C, RVT-Retrons, Cas1_I-II-III (cl00656), Cas2 (COG3512)