myRT

myRT report for GCA_000424325.1_ASM42432v1

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Seq: AUJR01000005.1 [Clostridium] clostridioforme AGR2157 G614DRAFT_scaffold00004.4_C, whole genome shotgun sequence (170736 bp)
Overview 1 RT 1: 1759-6108 bp Neighborhood of RT #1 [1759, 6108] INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII Feature: gene Location: 1759-2700 bp Feature: domain Description: INT_RitB_C_like Location: 2056-2632 bp Feature: domain Description: INT_RitB_C_like Location: 2056-2632 bp Feature: gene Location: 2687-3697 bp Feature: domain Description: Phage_int_SAM_1 Location: 2732-2984 bp Feature: domain Description: Phage_int_SAM_1 Location: 2732-2984 bp Feature: domain Description: INT_RitC_C_like Location: 3065-3617 bp Feature: domain Description: INT_RitC_C_like Location: 3065-361 7 bp Feature: gene Location: 3875-4972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3947-4160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3947-41 60 bp Feature: gene Location: 4998-5387 bp Feature: gene Location: 5626-6108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), RVT-GII

Seq: AUJR01000014.1 [Clostridium] clostridioforme AGR2157 G614DRAFT_scaffold00013.13_C, whole genome shotgun sequence (98225 bp)
Overview 1 RT 1: 51209-53568 bp Neighborhood of RT #1 [51209, 53660] group_II_RT_mat RVT-GII DUF3837 PerM Feature: gene Location: 51209-51379 bp Feature: gene Location: 51426-51641 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 51447-51639 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 51447-51639 bp Feature: gene Location: 51667-51834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51673-51808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51673-51808 bp Feature: gene Location: 51901-52209 bp Feature: domain Description: DUF3837 Location: 51907-52204 bp Feature: domain Description: DUF3837 Location: 51907-52 2 04 bp Feature: gene Location: 52413-53660 bp Feature: domain Description: PerM Location: 52530-53568 bp Feature: domain Description: PerM Location: 52 530-53568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, DUF3837 (pfam12939), PerM (COG0628)

Seq: KE384164.1 Clostridium clostridioforme AGR2157 genomic scaffold G614DRAFT_scaffold00017.17, whole genome shotgun sequence (89284 bp)
Overview 1 RT 1: 1024-5512 bp Neighborhood of RT #1 [1024, 5667] Maff2 VirD4 RVT_N RVT-GII GIIM VirD4 Feature: gene Location: 1024-1242 bp Feature: domain Description: Maff2 Location: 1027-1234 bp Feature: domain Description: Maff2 Location: 1027-123 4 bp Feature: gene Location: 1457-2563 bp Feature: domain Description: VirD4 Location: 1469-2459 bp Feature: domain Description: VirD4 Location: 1469-2459 bp Feature: gene Location: 2698-4362 bp Feature: domain Description: RVT_N Location: 2743-2986 bp Feature: domain Description: RVT_N Location: 2743 -2986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3031-3682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 03 1-3 682 bp Feature: domain Description: GIIM Note: maturase Location: 3733-3967 bp Feature: domain Description: GIIM Note: maturase Location: 3 73 3 -3 967 bp Feature: gene Location: 4423-4908 bp Feature: gene Location: 4945-5667 bp Feature: domain Description: VirD4 Location: 5188-5512 bp Feature: domain Description: VirD4 Location: 5188-5512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), VirD4 (COG3505), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: AUJR01000039.1 [Clostridium] clostridioforme AGR2157 G614DRAFT_scaffold00036.36_C, whole genome shotgun sequence (45835 bp)
Overview 1 RT 1: 940-5560 bp Neighborhood of RT #1 [940, 5589] RVT-GII Intron_maturas2 VirD4 Feature: gene Location: 940-1341 bp Feature: gene Location: 1352-1606 bp Feature: gene Location: 1873-3702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2158-2983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2158-2983 bp Feature: domain Description: Intron_maturas2 Location: 3067-3409 bp Feature: domain Description: Intron_maturas2 Location: 3067-34 09 bp Feature: gene Location: 3850-4023 bp Feature: gene Location: 4252-5589 bp Feature: domain Description: VirD4 Location: 4366-5560 bp Feature: domain Description: VirD4 Location: 4 366-5560 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), VirD4 (COG3505)

Seq: AUJR01000055.1 [Clostridium] clostridioforme AGR2157 G614DRAFT_scaffold00051.51_C, whole genome shotgun sequence (30463 bp)
Overview 1 RT 1: 23089-27163 bp Neighborhood of RT #1 [23089, 27163] MATE_Wzx_like INT_RitC_C_like RVT-GII GIIM Feature: gene Location: 23089-24543 bp Feature: domain Description: MATE_Wzx_like Location: 23113-24298 bp Feature: domain Description: MATE_Wzx_like Location: 23113-24298 bp Feature: gene Location: 25233-25781 bp Feature: domain Description: INT_RitC_C_like Location: 25236-25701 bp Feature: domain Description: INT_RitC_C_like Location: 25 236-25 701 bp Feature: gene Location: 25896-26609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25902-26124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 902-26124 bp Feature: domain Description: GIIM Note: maturase Location: 26178-26394 bp Feature: domain Description: GIIM Note: maturase Location: 26178-26394 bp Feature: gene Location: 26648-26821 bp Feature: gene Location: 26867-27163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MATE_Wzx_like (cd13128), INT_RitC_C_like (cd01182), RVT-GII, GIIM (pfam08388)

Seq: AUJR01000098.1 [Clostridium] clostridioforme AGR2157 G614DRAFT_scaffold00093.93_C, whole genome shotgun sequence (6330 bp)
Overview 1 RT 1: 3956-5975 bp Neighborhood of RT #1 [3956, 5986] VirD4 RVT-GII Feature: gene Location: 3956-4645 bp Feature: domain Description: VirD4 Location: 4196-4580 bp Feature: domain Description: VirD4 Location: 4196 -4580 bp Feature: gene Location: 4956-5279 bp Feature: gene Location: 5264-5986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5585-5975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5585-5975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII

Seq: AUJR01000116.1 [Clostridium] clostridioforme AGR2157 G614DRAFT_scaffold00111.111_C, whole genome shotgun sequence (2590 bp)
Overview 1 RT 1: 105-2397 bp Neighborhood of RT #1 [105, 2397] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 105-1937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369-1200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369-1200 bp Feature: domain Description: Intron_maturas2 Location: 1272-1587 bp Feature: domain Description: Intron_maturas2 Location: 127 2-1587 bp Feature: domain Description: HNHc Note: nucleases Location: 1734-1908 bp Feature: domain Description: HNHc Note: nucleases Location: 17 34-1908 bp Feature: gene Location: 1939-2397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)