myRT

myRT report for GCA_000424705.1_ASM42470v1

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Seq: KE384226.1 Candidatus Glomeribacter Glomeribacter sp. 1016415 genomic scaffold H174DRAFT_scaffold00001.1, whole genome shotgun sequence (1044762 bp)
Overview 1 RT 1: 35070-38190 bp 2 RT 2: 139067-148494 bp 3 RT 3: 341586-345709 bp 4 RT 4: 774887-781970 bp Neighborhood of RT #1 [35070, 38342] RVT-GII GIIM DUF1910 DUF1911 Neighborhood of RT #2 [139067, 148511] SR_ResInv TPR_8 COG5635 YjbI KOG0271 KOG0271 KOG0271 KOG0271 KOG0271 KOG0271 WD40 KOG0271 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [341586, 345984] RVT_N RVT-GII GIIM HTH_23 rve HEAT Neighborhood of RT #4 [774887, 782113] RVT-GII COG5635 YjbI KOG0272 KOG0272 KOG0266 Feature: gene Location: 35070-35333 bp Feature: gene Location: 35393-35623 bp Feature: gene Location: 35640-36938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35925-36564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35925-36564 bp Feature: domain Description: GIIM Note: maturase Location: 36636-36855 bp Feature: domain Description: GIIM Note: maturase Location: 36636-36855 bp Feature: gene Location: 36981-37217 bp Feature: gene Location: 37416-38342 bp Feature: domain Description: DUF1910 Location: 37425-37809 bp Feature: domain Description: DUF1 91 0 Location: 37425-37809 bp Feature: domain Description: DUF1911 Location: 37836-38190 bp Feature: domain Description: DUF1 91 1 Location: 37836-381 90 bp Feature: gene Location: 139067-139594 bp Feature: domain Description: SR_ResInv Location: 139145-139514 bp Feature: domain Description: SR_ResInv Location: 1 391 45-1 3951 4 bp Feature: gene Location: 139851-145592 bp Feature: domain Description: TPR_8 Location: 140079-140160 bp Feature: domain Description: TPR_8 Location: 1 40079-1 401 60 bp Feature: domain Description: COG5635 Location: 141834-142230 bp Feature: domain Description: COG5635 Location: 1 41 834-1 42230 bp Feature: domain Description: YjbI Location: 143217-143379 bp Feature: domain Description: YjbI Location: 1 4321 7-1 43379 bp Feature: domain Description: KOG0271 Location: 143517-143637 bp Feature: domain Description: KOG0271 Location: 1 4351 7-1 43637 bp Feature: domain Description: KOG0271 Location: 143652-143892 bp Feature: domain Description: KOG0271 Location: 1 43652-1 43892 bp Feature: domain Description: KOG0271 Location: 143898-144141 bp Feature: domain Description: KOG0271 Location: 1 43898-1 441 41 bp Feature: domain Description: KOG0271 Location: 144144-144396 bp Feature: domain Description: KOG0271 Location: 1 441 44-1 44396 bp Feature: domain Description: KOG0271 Location: 144405-144648 bp Feature: domain Description: KOG0271 Location: 1 44405-1 44648 bp Feature: domain Description: KOG0271 Location: 144657-144897 bp Feature: domain Description: KOG0271 Location: 1 44657-1 44897 bp Feature: domain Description: WD40 Location: 144897-145008 bp Feature: domain Description: WD40 Location: 1 44897-1 45008 bp Feature: domain Description: KOG0271 Location: 145038-145296 bp Feature: domain Description: KOG0271 Location: 1 45038-1 45296 bp Feature: gene Location: 146041-147138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146044-146623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 46044-1 46623 bp Feature: domain Description: GIIM Note: maturase Location: 146674-146908 bp Feature: domain Description: GIIM Note: maturase Location: 1 46674-1 46908 bp Feature: gene Location: 147226-148188 bp Feature: domain Description: PHA02517 Location: 147274-148066 bp Feature: domain Description: PHA0251 7 Location: 1 47274-1 48066 bp Feature: gene Location: 148188-148511 bp Feature: domain Description: InsE Location: 148206-148494 bp Feature: domain Description: InsE Location: 1 48206-1 48494 bp Feature: gene Location: 341586-341735 bp Feature: gene Location: 342053-342199 bp Feature: gene Location: 342220-343776 bp Feature: RT Description: RVT_N Location: 342436-342673 bp Feature: RT Description: RVT_N Location: 342436-342673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342724-343366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342724-343366 bp Feature: domain Description: GIIM Note: maturase Location: 343417-343651 bp Feature: domain Description: GIIM Note: maturase Location: 34341 7-343651 bp Feature: gene Location: 343863-345242 bp Feature: domain Description: HTH_23 Location: 343899-344040 bp Feature: domain Description: HTH_23 Location: 343899-344040 bp Feature: domain Description: rve Location: 344295-344658 bp Feature: domain Description: rve Location: 344295-344658 bp Feature: gene Location: 345400-345984 bp Feature: domain Description: HEAT Location: 345406-345709 bp Feature: domain Description: HEAT Location: 345406-345709 bp Feature: gene Location: 774887-775033 bp Feature: gene Location: 776256-776426 bp Feature: gene Location: 777116-777652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777458-777644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777458-777644 bp Feature: gene Location: 777764-777982 bp Feature: gene Location: 778328-782113 bp Feature: domain Description: COG5635 Location: 778751-779243 bp Feature: domain Description: COG5635 Location: 778751 -779243 bp Feature: domain Description: YjbI Location: 780032-780200 bp Feature: domain Description: YjbI Location: 780032-780200 bp Feature: domain Description: KOG0272 Location: 780224-781070 bp Feature: domain Description: KOG0272 Location: 780224-781 070 bp Feature: domain Description: KOG0272 Location: 781088-781619 bp Feature: domain Description: KOG0272 Location: 781 088-781 61 9 bp Feature: domain Description: KOG0266 Location: 781622-781970 bp Feature: domain Description: KOG0266 Location: 781 622-781 970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF1910 (pfam08928), DUF1911 (pfam08929), SR_ResInv (cd03768), TPR_8 (pfam13181), COG5635 (Predicted NTPase, NACHT family domain ), YjbI (COG2346), KOG0271 (KOG0271, Notchless-like WD40 repeat-containing protein ), WD40 (smart00320)
PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT_N (pfam13655), HTH_23 (pfam13384), rve (pfam00665), HEAT (sd00044), KOG0272 (KOG0272, U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) ), KOG0266 (KOG0266, WD40 repeat-containing protein )

Seq: KE384227.1 Candidatus Glomeribacter Glomeribacter sp. 1016415 genomic scaffold H174DRAFT_scaffold00002.2, whole genome shotgun sequence (1023150 bp)
Overview 1 RT 1: 811476-813295 bp Neighborhood of RT #1 [811476, 813295] RVT-GII GIIM Feature: gene Location: 811476-812885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 811830-812487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 811830-812 487 bp Feature: domain Description: GIIM Note: maturase Location: 812568-812787 bp Feature: domain Description: GIIM Note: maturase Location: 812 568-812 787 bp Feature: gene Location: 812882-813295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)