myRT

myRT report for GCA_000424905.1_ASM42490v1

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Seq: AUGH01000013.1 Salinispora pacifica CNS237 H303DRAFT_scaffold_7.8_C, whole genome shotgun sequence (220143 bp)
Overview 1 RT 1: 147636-161942 bp Neighborhood of RT #1 [147636, 162514] Laminin_G_3 RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat YD_repeat_2x RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat Rhs_assc_core PT-HINT YhhI RVT-GII GIIM INT_ICEBs1_C_like HTH_XRE Feature: gene Location: 147636-157469 bp Feature: domain Description: Laminin_G_3 Location: 150810-151296 bp Feature: domain Description: Laminin_G_3 Location: 1 5081 0-1 51 296 bp Feature: domain Description: RHS_repeat Location: 151779-151866 bp Feature: domain Description: RHS_repeat Location: 1 51 779-1 51 866 bp Feature: domain Description: RHS_repeat Location: 152037-152091 bp Feature: domain Description: RHS_repeat Location: 1 52037-1 52091 bp Feature: domain Description: RHS_repeat Location: 152190-152277 bp Feature: domain Description: RHS_repeat Location: 1 521 90-1 52277 bp Feature: domain Description: RHS_repeat Location: 152424-152550 bp Feature: domain Description: RHS_repeat Location: 1 52424-1 52550 bp Feature: domain Description: RHS_repeat Location: 152568-152658 bp Feature: domain Description: RHS_repeat Location: 1 52568-1 52658 bp Feature: domain Description: RHS_repeat Location: 152742-152805 bp Feature: domain Description: RHS_repeat Location: 1 52742-1 52805 bp Feature: domain Description: RHS_repeat Location: 152805-152943 bp Feature: domain Description: RHS_repeat Location: 1 52805-1 52943 bp Feature: domain Description: RHS_repeat Location: 152964-153072 bp Feature: domain Description: RHS_repeat Location: 1 52964-1 53072 bp Feature: domain Description: RHS_repeat Location: 153135-153252 bp Feature: domain Description: RHS_repeat Location: 1 531 35-1 53252 bp Feature: domain Description: RHS_repeat Location: 153282-153336 bp Feature: domain Description: RHS_repeat Location: 1 53282-1 53336 bp Feature: domain Description: YD_repeat_2x Location: 153399-153489 bp Feature: domain Description: YD_repeat_2x Location: 1 53399-1 53489 bp Feature: domain Description: RHS_repeat Location: 153555-153654 bp Feature: domain Description: RHS_repeat Location: 1 53555-1 53654 bp Feature: domain Description: RHS_repeat Location: 153693-153789 bp Feature: domain Description: RHS_repeat Location: 1 53693-1 53789 bp Feature: domain Description: RHS_repeat Location: 153810-153885 bp Feature: domain Description: RHS_repeat Location: 1 5381 0-1 53885 bp Feature: domain Description: RHS_repeat Location: 153900-154011 bp Feature: domain Description: RHS_repeat Location: 1 53900-1 5401 1 bp Feature: domain Description: RHS_repeat Location: 154062-154152 bp Feature: domain Description: RHS_repeat Location: 1 54062-1 541 52 bp Feature: domain Description: RHS_repeat Location: 154167-154287 bp Feature: domain Description: RHS_repeat Location: 1 541 67-1 54287 bp Feature: domain Description: RHS_repeat Location: 154392-154503 bp Feature: domain Description: RHS_repeat Location: 1 54392-1 54503 bp Feature: domain Description: RHS_repeat Location: 154530-154635 bp Feature: domain Description: RHS_repeat Location: 1 54530-1 54635 bp Feature: domain Description: RHS_repeat Location: 154650-154740 bp Feature: domain Description: RHS_repeat Location: 1 54650-1 54740 bp Feature: domain Description: RHS_repeat Location: 154773-154857 bp Feature: domain Description: RHS_repeat Location: 1 54773-1 54857 bp Feature: domain Description: RHS_repeat Location: 154986-155070 bp Feature: domain Description: RHS_repeat Location: 1 54986-1 55070 bp Feature: domain Description: RHS_repeat Location: 155202-155283 bp Feature: domain Description: RHS_repeat Location: 1 55202-1 55283 bp Feature: domain Description: Rhs_assc_core Location: 155487-155724 bp Feature: domain Description: Rhs_assc_core Location: 1 55487-1 55724 bp Feature: domain Description: PT-HINT Location: 156741-157140 bp Feature: domain Description: PT-HINT Location: 1 56741 -1 571 40 bp Feature: gene Location: 158119-158700 bp Feature: domain Description: YhhI Location: 158437-158614 bp Feature: domain Description: YhhI Location: 1 58437-1 5861 4 bp Feature: gene Location: 158917-160383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159256-159952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 59256-1 59952 bp Feature: domain Description: GIIM Note: maturase Location: 160024-160243 bp Feature: domain Description: GIIM Note: maturase Location: 1 60024-1 60243 bp Feature: gene Location: 160928-161194 bp Feature: domain Description: INT_ICEBs1_C_like Location: 160961-161093 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 1 60961 -1 61 093 bp Feature: gene Location: 161768-162514 bp Feature: domain Description: HTH_XRE Location: 161777-161942 bp Feature: domain Description: HTH_XRE Location: 1 61 777-1 61 942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RHS_repeat (pfam05593), YD_repeat_2x (TIGR01643), Rhs_assc_core (TIGR03696), PT-HINT (pfam07591), YhhI (COG5433), RVT-GII, GIIM (pfam08388), INT_ICEBs1_C_like (cd01189), HTH_XRE (smart00530)