myRT

myRT report for GCA_000424985.1_ASM42498v1

Download annotations/find similar RTs

Seq: AUKX01000023.1 Arenibacter latericius DSM 15913 H344DRAFT_scaffold00020.20_C, whole genome shotgun sequence (74487 bp)
Overview 1 RT 1: 71581-74360 bp Neighborhood of RT #1 [71581, 74485] HTH_Tnp_1 PHA02517 RVT-GII GIIM group_II_RT_mat Feature: gene Location: 71581-71994 bp Feature: domain Description: HTH_Tnp_1 Location: 71629-71860 bp Feature: domain Description: HTH_Tnp_1 Location: 71 629-71 860 bp Feature: gene Location: 71997-72833 bp Feature: domain Description: PHA02517 Location: 72228-72792 bp Feature: domain Description: PHA0251 7 Location: 72228-72792 bp Feature: gene Location: 73344-73868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73353-73482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73353-73482 bp Feature: domain Description: GIIM Note: maturase Location: 73563-73785 bp Feature: domain Description: GIIM Note: maturase Location: 73563-73785 bp Feature: gene Location: 74006-74485 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 74012-74360 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 7401 2-74360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416)

Seq: AUKX01000037.1 Arenibacter latericius DSM 15913 H344DRAFT_scaffold00031.31_C, whole genome shotgun sequence (58690 bp)
Overview 1 RT 1: 5132-13137 bp Neighborhood of RT #1 [5132, 13137] RMtype1_S_EcoKI-TRD1-CR1_like RMtype1_S_EcoKI-TRD1-CR1_like RVT-UG2 DUF4145 HsdR Feature: gene Location: 5132-6250 bp Feature: domain Description: RMtype1_S_EcoKI-TRD1-CR1_like Location: 5141-5627 bp Feature: domain Description: RMtype1_S_EcoKI-TRD1-CR1_like Location: 5141-562 7 bp Feature: domain Description: RMtype1_S_EcoKI-TRD1-CR1_like Location: 5738-6209 bp Feature: domain Description: RMtype1_S_EcoKI-TRD1-CR1_like Location: 5738-62 09 bp Feature: gene Location: 6597-6737 bp Feature: gene Location: 6745-8310 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 6973-7897 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 6973-7897 bp Feature: gene Location: 8564-12058 bp Feature: domain Description: DUF4145 Location: 8627-8891 bp Feature: domain Description: DUF4145 Location: 862 7-8891 bp Feature: domain Description: HsdR Location: 9203-11999 bp Feature: domain Description: HsdR Location: 92 03-11999 bp Feature: gene Location: 12448-13137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_EcoKI-TRD1-CR1_like (cd17252), RVT-UG2, DUF4145 (pfam13643), HsdR (COG4096)

Seq: KE384291.1 Arenibacter latericius DSM 15913 genomic scaffold H344DRAFT_scaffold00038.38, whole genome shotgun sequence (41420 bp)
Overview 1 RT 1: 34111-40873 bp Neighborhood of RT #1 [34111, 40881] CarbopepD_reg_2 Plug OMP_b-brl_3 RVT-GII GIIM DUF1704 Feature: gene Location: 34111-34590 bp Feature: gene Location: 34592-37105 bp Feature: domain Description: CarbopepD_reg_2 Location: 34682-34955 bp Feature: domain Description: CarbopepD_reg_2 Location: 3 4682-3 4955 bp Feature: domain Description: Plug Location: 35030-35264 bp Feature: domain Description: Plug Location: 3 503 0-3 5264 bp Feature: domain Description: OMP_b-brl_3 Location: 35732-37019 bp Feature: domain Description: OMP_b-brl_3 Location: 3 573 2-3 7019 bp Feature: gene Location: 37473-38882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37815-38433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 7815-3 843 3 bp Feature: domain Description: GIIM Note: maturase Location: 38484-38703 bp Feature: domain Description: GIIM Note: maturase Location: 3 8484-3 8703 bp Feature: gene Location: 39351-39524 bp Feature: gene Location: 39706-40881 bp Feature: domain Description: DUF1704 Location: 39850-40873 bp Feature: domain Description: DUF1704 Location: 3 9850-40873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CarbopepD_reg_2 (pfam13715), Plug (pfam07715), OMP_b-brl_3 (pfam14905), RVT-GII, GIIM (pfam08388), DUF1704 (pfam08014)

Seq: AUKX01000094.1 Arenibacter latericius DSM 15913 H344DRAFT_scaffold00086.86_C, whole genome shotgun sequence (1883 bp)
Overview 1 RT 1: 64-1607 bp Neighborhood of RT #1 [64, 1607] RVT-GII GIIM Feature: gene Location: 64-1326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277-937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277-937 bp Feature: domain Description: GIIM Note: maturase Location: 1021-1225 bp Feature: domain Description: GIIM Note: maturase Location: 1021-1225 bp Feature: gene Location: 1467-1607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AUKX01000100.1 Arenibacter latericius DSM 15913 H344DRAFT_scaffold00092.92_C, whole genome shotgun sequence (1522 bp)
Overview 1 RT 1: 128-1328 bp Neighborhood of RT #1 [128, 1519] RVT-GII GIIM Feature: gene Location: 128-1519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 452-1070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45 2-1070 bp Feature: domain Description: GIIM Note: maturase Location: 1124-1328 bp Feature: domain Description: GIIM Note: maturase Location: 1124-1328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AUKX01000101.1 Arenibacter latericius DSM 15913 H344DRAFT_scaffold00093.93_C, whole genome shotgun sequence (1412 bp)
Overview 1 RT 1: 3-1321 bp Neighborhood of RT #1 [3, 1329] RVT-GII Feature: gene Location: 3-257 bp Feature: gene Location: 287-640 bp Feature: gene Location: 640-1329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838-1321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838-1321 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AUKX01000102.1 Arenibacter latericius DSM 15913 H344DRAFT_scaffold00094.94_C, whole genome shotgun sequence (1396 bp)
Overview 1 RT 1: 493-1303 bp Neighborhood of RT #1 [493, 1395] RVT-GII Feature: gene Location: 493-1395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 688-1303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 688-1303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII