myRT

myRT report for GCA_000425265.1_ASM42526v1

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Seq: KE384342.1 Desulfovibrio zosterae DSM 11974 genomic scaffold H589DRAFT_scaffold00001.1, whole genome shotgun sequence (1006556 bp)
Overview 1 RT 1: 747260-750087 bp Neighborhood of RT #1 [747260, 750087] CoiA RVT-Retrons HTH_XRE Feature: gene Location: 747260-747427 bp Feature: gene Location: 747661-748512 bp Feature: domain Description: CoiA Location: 747709-748078 bp Feature: domain Description: CoiA Location: 747709-748078 bp Feature: gene Location: 748578-749516 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 748779-749310 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 748779-74931 0 bp Feature: gene Location: 749437-749751 bp Feature: domain Description: HTH_XRE Location: 749452-749620 bp Feature: domain Description: HTH_XRE Location: 749452-749620 bp Feature: gene Location: 749815-750087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CoiA (pfam06054), RVT-Retrons, HTH_XRE (smart00530)

Seq: AUDC01000019.1 Desulfovibrio zosterae DSM 11974 H589DRAFT_scaffold00009.9_C, whole genome shotgun sequence (100834 bp)
Overview 1 RT 1: 96696-100549 bp Neighborhood of RT #1 [96696, 100632] Csx1_III-U RVT-CRISPR Cas_Cas1 Cas2_I_II_III Feature: gene Location: 96696-97892 bp Feature: domain Description: Csx1_III-U Location: 96735-97377 bp Feature: domain Description: Csx1_III-U Location: 96735-97377 bp Feature: gene Location: 97980-98108 bp Feature: gene Location: 98503-99327 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 98710-99310 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 98710-99310 bp Feature: gene Location: 99320-100318 bp Feature: domain Description: Cas_Cas1 Location: 99338-100187 bp Feature: domain Description: Cas_Cas1 Location: 99338-100187 bp Feature: gene Location: 100315-100632 bp Feature: domain Description: Cas2_I_II_III Location: 100354-100549 bp Feature: domain Description: Cas2 _I_II_III Location: 100354-100549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Csx1_III-U (cl21570), RVT-CRISPR, Cas_Cas1 (pfam01867), Cas2_I_II_III (cl11442)