myRT

myRT report for GCA_000425765.1_ASM42576v1

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Seq: KE384444.1 Pseudomonas parafulva DSM 17004 genomic scaffold H619DRAFT_scaffold00005.5, whole genome shotgun sequence (334665 bp)
Overview 1 RT 1: 12822-15269 bp Neighborhood of RT #1 [12822, 15409] RVT-GII RVT-GII Feature: gene Location: 12822-13094 bp Feature: gene Location: 13721-13957 bp Feature: gene Location: 14077-14727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14581-14722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4581 -1 4722 bp Feature: gene Location: 14918-15409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14936-15269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4936-1 5269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: KE384445.1 Pseudomonas parafulva DSM 17004 genomic scaffold H619DRAFT_scaffold00007.7, whole genome shotgun sequence (281286 bp)
Overview 1 RT 1: 137969-141313 bp Neighborhood of RT #1 [137969, 141313] RVT-DGRs Avd_like Feature: gene Location: 137969-138358 bp Feature: gene Location: 138373-138936 bp Feature: gene Location: 138980-140272 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 139364-140048 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 139364-140048 bp Feature: gene Location: 140335-140688 bp Feature: domain Description: Avd_like Location: 140362-140668 bp Feature: domain Description: Avd_like Location: 140362 -140668 bp Feature: gene Location: 140741-141313 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: AUEB01000036.1 Pseudomonas parafulva NBRC 16636 = DSM 17004 H619DRAFT_scaffold00028.28_C, whole genome shotgun sequence (10614 bp)
Overview 1 RT 1: 4399-9908 bp Neighborhood of RT #1 [4399, 9908] AAA_15 AAA_21 TOPRIM_OLD DEXQc_UvrD DEXQc_UvrD UvrD RVT-UG12 Feature: gene Location: 4399-6117 bp Feature: domain Description: AAA_15 Location: 4402-4624 bp Feature: domain Description: AAA_15 Location: 4402-4624 bp Feature: domain Description: AAA_21 Location: 5128-5368 bp Feature: domain Description: AAA_21 Location: 5128-53 68 bp Feature: domain Description: TOPRIM_OLD Location: 5491-5713 bp Feature: domain Description: TOPRIM_OLD Location: 5491-5713 bp Feature: gene Location: 6104-7477 bp Feature: domain Description: DEXQc_UvrD Location: 6143-6338 bp Feature: domain Description: DEXQc_UvrD Location: 6143 -63 3 8 bp Feature: domain Description: DEXQc_UvrD Location: 6395-6638 bp Feature: domain Description: DEXQc_UvrD Location: 63 95-663 8 bp Feature: domain Description: UvrD Location: 7292-7439 bp Feature: domain Description: UvrD Location: 7292-743 9 bp Feature: gene Location: 7635-9296 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 7965-8412 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 7965-8412 bp Feature: gene Location: 9389-9583 bp Feature: gene Location: 9585-9908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), AAA_21 (pfam13304), TOPRIM_OLD (cd01026), DEXQc_UvrD (cd17932), UvrD (COG0210), RVT-UG12