myRT

myRT report for GCA_000426245.1_ASM42624v1

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Seq: AUEZ01000012.1 Bradyrhizobium sp. Ai1a-2 K288DRAFT_scaffold00012.12_C, whole genome shotgun sequence (141563 bp)
Overview 1 RT 1: 60878-66633 bp Neighborhood of RT #1 [60878, 66633] AraC_N AraC Tas RVT-Retrons LysR Feature: gene Location: 60878-61741 bp Feature: domain Description: AraC_N Location: 60926-61376 bp Feature: domain Description: AraC_N Location: 60926-61 376 bp Feature: domain Description: AraC Location: 61385-61706 bp Feature: domain Description: AraC Location: 61 385-61 706 bp Feature: gene Location: 61970-62950 bp Feature: domain Description: Tas Location: 61994-62918 bp Feature: domain Description: Tas Location: 61 994-6291 8 bp Feature: gene Location: 64400-65083 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 64406-64823 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 64406-64823 bp Feature: gene Location: 65520-66416 bp Feature: domain Description: LysR Location: 65526-66378 bp Feature: domain Description: LysR Location: 65526-66378 bp Feature: gene Location: 66505-66633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraC_N (pfam06719), AraC (COG2207), Tas (COG0667), RVT-Retrons, LysR (COG0583)

Seq: AUEZ01000043.1 Bradyrhizobium sp. Ai1a-2 K288DRAFT_scaffold00042.42_C, whole genome shotgun sequence (76106 bp)
Overview 1 RT 1: 49568-53459 bp Neighborhood of RT #1 [49568, 53459] DUF2384 DUF2384 RVT-UG20 Feature: gene Location: 49568-50464 bp Feature: gene Location: 50470-50934 bp Feature: domain Description: DUF2384 Location: 50596-50707 bp Feature: domain Description: DUF2 384 Location: 50596-50707 bp Feature: domain Description: DUF2384 Location: 50800-50869 bp Feature: domain Description: DUF2 384 Location: 50800-50869 bp Feature: gene Location: 50943-52595 bp Feature: RT Description: RVT-UG20 Note: UG20 RT Location: 51318-51816 bp Feature: RT Description: RVT-UG2 0 Note: UG2 0 RT Location: 51318-51816 bp Feature: gene Location: 52647-52805 bp Feature: gene Location: 52917-53459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2384 (pfam09722), RVT-UG20

Seq: AUEZ01000128.1 Bradyrhizobium sp. Ai1a-2 K288DRAFT_scaffold00127.127_C, whole genome shotgun sequence (11924 bp)
Overview 1 RT 1: 8033-11922 bp Neighborhood of RT #1 [8033, 11922] PRK13822 YncB RVT-GII GIIM Feature: gene Location: 8033-9955 bp Feature: domain Description: PRK13822 Location: 8039-9950 bp Feature: domain Description: PRK13 822 Location: 803 9-9950 bp Feature: gene Location: 9988-10464 bp Feature: domain Description: YncB Location: 10087-10435 bp Feature: domain Description: YncB Location: 10087-1043 5 bp Feature: gene Location: 10601-11689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10718-11303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10718-113 03 bp Feature: domain Description: GIIM Note: maturase Location: 11384-11591 bp Feature: domain Description: GIIM Note: maturase Location: 113 84-11591 bp Feature: gene Location: 11746-11922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13822 (conjugal transfer coupling protein TraG; Provisional), YncB (COG1525), RVT-GII, GIIM (pfam08388)

Seq: AUEZ01000169.1 Bradyrhizobium sp. Ai1a-2 K288DRAFT_scaffold00167.167_C, whole genome shotgun sequence (5475 bp)
Overview 1 RT 1: 2-5206 bp Neighborhood of RT #1 [2, 5256] DDE_Tnp_1_6 RVT-GII WGR_MMR_like COG5489 RVT-GII GIIM DDE_Tnp_IS66 COG3547 Feature: gene Location: 2-316 bp Feature: domain Description: DDE_Tnp_1_6 Location: 68-245 bp Feature: domain Description: DDE_Tnp_1_6 Location: 68-24 5 bp Feature: gene Location: 329-631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 545-623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54 5-623 bp Feature: gene Location: 1304-1627 bp Feature: domain Description: WGR_MMR_like Location: 1391-1604 bp Feature: domain Description: WGR_MMR_like Location: 1391-1604 bp Feature: gene Location: 1863-2180 bp Feature: domain Description: COG5489 Location: 1866-2178 bp Feature: domain Description: COG54 89 Location: 1866-2178 bp Feature: gene Location: 2504-2656 bp Feature: gene Location: 2823-3092 bp Feature: gene Location: 3107-3865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3113-3473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3113-34 73 bp Feature: domain Description: GIIM Note: maturase Location: 3560-3770 bp Feature: domain Description: GIIM Note: maturase Location: 3560-3770 bp Feature: gene Location: 3919-4107 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3949-4105 bp Feature: domain Description: DDE_Tnp_IS66 Location: 394 9-4 105 bp Feature: gene Location: 4165-5256 bp Feature: domain Description: COG3547 Location: 4369-5206 bp Feature: domain Description: COG354 7 Location: 4 369-5206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_6 (pfam13751), RVT-GII, WGR_MMR_like (cd07996), COG5489 (Uncharacterized conserved protein, DUF736 family ), GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), COG3547 (Transposase )

Seq: AUEZ01000215.1 Bradyrhizobium sp. Ai1a-2 K288DRAFT_scaffold00213.213_C, whole genome shotgun sequence (2031 bp)
Overview 1 RT 1: 3-1545 bp Neighborhood of RT #1 [3, 1545] RVT-GII RND_mfp HlyD_3 Feature: gene Location: 3-410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42-240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42-240 bp Feature: gene Location: 748-1419 bp Feature: domain Description: RND_mfp Location: 760-877 bp Feature: domain Description: RND_mfp Location: 760-877 bp Feature: domain Description: HlyD_3 Location: 1063-1294 bp Feature: domain Description: HlyD_3 Location: 1063-1294 bp Feature: gene Location: 1330-1545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RND_mfp (TIGR01730), HlyD_3 (pfam13437)