myRT

myRT report for GCA_000426265.1_ASM42626v1

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Seq: AUFA01000036.1 Bradyrhizobium sp. Cp5.3 K289DRAFT_scaffold00034.34_C, whole genome shotgun sequence (68797 bp)
Overview 1 RT 1: 27574-31200 bp Neighborhood of RT #1 [27574, 31200] DUF3892 RVT-GII Intron_maturas2 Feature: gene Location: 27574-27861 bp Feature: domain Description: DUF3892 Location: 27592-27844 bp Feature: domain Description: DUF3892 Location: 27592-27844 bp Feature: gene Location: 28269-28865 bp Feature: gene Location: 28865-30727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29132-29963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291 32-29963 bp Feature: domain Description: Intron_maturas2 Location: 30101-30356 bp Feature: domain Description: Intron_maturas2 Location: 301 01 -30356 bp Feature: gene Location: 30792-30950 bp Feature: gene Location: 31024-31200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3892 (pfam13031), RVT-GII, Intron_maturas2 (pfam01348)

Seq: AUFA01000094.1 Bradyrhizobium sp. Cp5.3 K289DRAFT_scaffold00092.92_C, whole genome shotgun sequence (7686 bp)
Overview 1 RT 1: 262-2260 bp Neighborhood of RT #1 [262, 2373] RVT-GII DUF772 Feature: gene Location: 262-828 bp Feature: gene Location: 970-1569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1174-1405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1174-1405 bp Feature: gene Location: 1593-1823 bp Feature: gene Location: 1990-2373 bp Feature: domain Description: DUF772 Location: 2149-2260 bp Feature: domain Description: DUF772 Location: 2 149-2 2 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF772 (pfam05598)

Seq: AUFA01000096.1 Bradyrhizobium sp. Cp5.3 K289DRAFT_scaffold00094.94_C, whole genome shotgun sequence (7493 bp)
Overview 1 RT 1: 244-6886 bp Neighborhood of RT #1 [244, 7188] COG3547 DDE_Tnp_1 DDE_Tnp_1_6 RVT-GII GIIM RVT-GII GIIM RVT-GII PinE Zn_ribbon_recom Feature: gene Location: 244-1269 bp Feature: domain Description: COG3547 Location: 343-1222 bp Feature: domain Description: COG3 547 Location: 3 43 -1222 bp Feature: gene Location: 1356-2501 bp Feature: domain Description: DDE_Tnp_1 Location: 1986-2202 bp Feature: domain Description: DDE_Tnp_1 Location: 1986-2202 bp Feature: domain Description: DDE_Tnp_1_6 Location: 2265-2412 bp Feature: domain Description: DDE_Tnp_1_6 Location: 2265-2412 bp Feature: gene Location: 2512-3141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2584-2755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2584-2755 bp Feature: domain Description: GIIM Note: maturase Location: 2833-3049 bp Feature: domain Description: GIIM Note: maturase Location: 283 3 -3 049 bp Feature: gene Location: 3149-4399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3353-4010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 53 -4010 bp Feature: domain Description: GIIM Note: maturase Location: 4091-4313 bp Feature: domain Description: GIIM Note: maturase Location: 4091-43 13 bp Feature: gene Location: 4449-4682 bp Feature: gene Location: 4923-5183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4926-5157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4926-5157 bp Feature: gene Location: 5183-5428 bp Feature: gene Location: 5722-7188 bp Feature: domain Description: PinE Location: 5770-6358 bp Feature: domain Description: PinE Location: 5770-63 58 bp Feature: domain Description: Zn_ribbon_recom Location: 6715-6886 bp Feature: domain Description: Zn_ribbon_recom Location: 6715-6886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_1 (pfam01609), DDE_Tnp_1_6 (pfam13751), RVT-GII, GIIM (pfam08388), PinE (COG1961), Zn_ribbon_recom (pfam13408)

Seq: AUFA01000117.1 Bradyrhizobium sp. Cp5.3 K289DRAFT_scaffold00115.115_C, whole genome shotgun sequence (3035 bp)
Overview 1 RT 1: 119-2725 bp Neighborhood of RT #1 [119, 2725] HTH_21 RVT-GII Feature: gene Location: 119-355 bp Feature: domain Description: HTH_21 Location: 248-335 bp Feature: domain Description: HTH_21 Location: 24 8-335 bp Feature: gene Location: 376-1953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 787-1477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 787-14 77 bp Feature: gene Location: 1950-2222 bp Feature: gene Location: 2336-2725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_21 (pfam13276), RVT-GII