myRT

myRT report for GCA_000426285.1_ASM42628v1

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Seq: AUFB01000040.1 Rhizobium leucaenae USDA 9039 K290DRAFT_scaffold00040.40_C, whole genome shotgun sequence (34153 bp)
Overview 1 RT 1: 2-2686 bp Neighborhood of RT #1 [2, 2686] DUF736 RVT_N RVT-GII GIIM Feature: gene Location: 2-154 bp Feature: domain Description: DUF736 Location: 5-152 bp Feature: domain Description: DUF736 Location: 5-1 52 bp Feature: gene Location: 284-487 bp Feature: gene Location: 770-2290 bp Feature: domain Description: RVT_N Location: 821-1049 bp Feature: domain Description: RVT_N Location: 821 -1 049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1109-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 09-1 748 bp Feature: domain Description: GIIM Note: maturase Location: 1805-2033 bp Feature: domain Description: GIIM Note: maturase Location: 1 805-2033 bp Feature: gene Location: 2374-2520 bp Feature: gene Location: 2546-2686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF736 (pfam05284), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: AUFB01000041.1 Rhizobium leucaenae USDA 9039 K290DRAFT_scaffold00041.41_C, whole genome shotgun sequence (33515 bp)
Overview 1 RT 1: 6684-11512 bp Neighborhood of RT #1 [6684, 11547] HTH_29 rve RVT-UG17 SLATT_5 DUF4263 Feature: gene Location: 6684-7421 bp Feature: gene Location: 7428-8849 bp Feature: domain Description: HTH_29 Location: 7470-7653 bp Feature: domain Description: HTH_2 9 Location: 7470-7653 bp Feature: domain Description: rve Location: 7854-8220 bp Feature: domain Description: rve Location: 7854-82 2 0 bp Feature: gene Location: 9067-10383 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 9295-9877 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 92 95-9877 bp Feature: gene Location: 10389-10967 bp Feature: domain Description: SLATT_5 Location: 10416-10950 bp Feature: domain Description: SLATT_5 Location: 10416-10950 bp Feature: gene Location: 11260-11547 bp Feature: domain Description: DUF4263 Location: 11266-11512 bp Feature: domain Description: DUF42 63 Location: 112 66-11512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), rve (pfam00665), RVT-UG17, SLATT_5 (pfam18160), DUF4263 (pfam14082)

Seq: AUFB01000065.1 Rhizobium leucaenae USDA 9039 K290DRAFT_scaffold00064.64_C, whole genome shotgun sequence (11197 bp)
Overview 1 RT 1: 4039-8117 bp Neighborhood of RT #1 [4039, 8117] AccC RVT-GII GIIM Feature: gene Location: 4039-5328 bp Feature: domain Description: AccC Location: 4057-5263 bp Feature: domain Description: AccC Location: 4057-5263 bp Feature: gene Location: 5561-5794 bp Feature: gene Location: 5846-7096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6062-6707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6062-6707 bp Feature: domain Description: GIIM Note: maturase Location: 6794-7004 bp Feature: domain Description: GIIM Note: maturase Location: 6794-7004 bp Feature: gene Location: 7313-7588 bp Feature: gene Location: 7827-8117 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AccC (COG0439), RVT-GII, GIIM (pfam08388)

Seq: AUFB01000094.1 Rhizobium leucaenae USDA 9039 K290DRAFT_scaffold00093.93_C, whole genome shotgun sequence (1539 bp)
Overview 1 RT 1: 10-1536 bp Neighborhood of RT #1 [10, 1536] RVT-GII GIIM Feature: gene Location: 10-1332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298-955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298-955 bp Feature: domain Description: GIIM Note: maturase Location: 1024-1237 bp Feature: domain Description: GIIM Note: maturase Location: 1024 -1237 bp Feature: gene Location: 1351-1536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)