myRT

myRT report for GCA_000426305.1_ASM42630v1

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Seq: KE384520.1 Anaerovorax odorimutans DSM 5092 genomic scaffold K292DRAFT_scaffold00008.8, whole genome shotgun sequence (129426 bp)
Overview 1 RT 1: 3-2656 bp Neighborhood of RT #1 [3, 2667] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-UG12 AbrB COG1569 Feature: gene Location: 3-335 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6-150 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6-1 50 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 171-294 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 71 -294 bp Feature: gene Location: 454-1794 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 478-874 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 478-874 bp Feature: gene Location: 2036-2284 bp Feature: domain Description: AbrB Location: 2042-2198 bp Feature: domain Description: AbrB Location: 2042-21 98 bp Feature: gene Location: 2362-2667 bp Feature: domain Description: COG1569 Location: 2368-2656 bp Feature: domain Description: COG1 569 Location: 2368-2656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-UG12, AbrB (pfam05145), COG1569 (Predicted nucleic acid-binding protein, contains PIN domain )

Seq: AUFC01000037.1 Anaerovorax odorimutans DSM 5092 K292DRAFT_scaffold00034.34_C, whole genome shotgun sequence (23852 bp)
Overview 1 RT 1: 13697-23628 bp Neighborhood of RT #1 [13697, 23849] AIM24 SLH SLH SLH IPT_CGTD RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 13697-14512 bp Feature: domain Description: AIM24 Location: 13709-14423 bp Feature: domain Description: AIM2 4 Location: 13709-1442 3 bp Feature: gene Location: 14807-21091 bp Feature: domain Description: SLH Location: 14951-15044 bp Feature: domain Description: SLH Location: 14951-15044 bp Feature: domain Description: SLH Location: 15098-15224 bp Feature: domain Description: SLH Location: 15098-152 2 4 bp Feature: domain Description: SLH Location: 15278-15380 bp Feature: domain Description: SLH Location: 152 78-15380 bp Feature: domain Description: IPT_CGTD Location: 15665-15908 bp Feature: domain Description: IPT_CGTD Location: 15665-15908 bp Feature: gene Location: 21568-22752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21928-22546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 192 8-2 2 546 bp Feature: domain Description: GIIM Note: maturase Location: 22597-22747 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 597-2 2 747 bp Feature: gene Location: 23238-23849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23247-23364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 32 47-2 3364 bp Feature: domain Description: GIIM Note: maturase Location: 23421-23628 bp Feature: domain Description: GIIM Note: maturase Location: 2 342 1-2 362 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AIM24 (pfam01987), SLH (pfam00395), IPT_CGTD (cd00604), RVT-GII, GIIM (pfam08388)

Seq: AUFC01000039.1 Anaerovorax odorimutans DSM 5092 K292DRAFT_scaffold00036.36_C, whole genome shotgun sequence (21118 bp)
Overview 1 RT 1: 2336-9506 bp Neighborhood of RT #1 [2336, 9523] Resolvase Recombinase Zn_ribbon_recom RVT-Retrons BaeS OmpR Feature: gene Location: 2336-3580 bp Feature: domain Description: Resolvase Location: 2393-2831 bp Feature: domain Description: Resolvase Location: 23 93 -283 1 bp Feature: domain Description: Recombinase Location: 2903-3224 bp Feature: domain Description: Recombinase Location: 2903 -3 224 bp Feature: domain Description: Zn_ribbon_recom Location: 3296-3446 bp Feature: domain Description: Zn_ribbon_recom Location: 3 296-3 446 bp Feature: gene Location: 3851-4669 bp Feature: gene Location: 4861-5964 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5017-5581 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5017-5581 bp Feature: gene Location: 6822-8828 bp Feature: domain Description: BaeS Location: 7935-8820 bp Feature: domain Description: BaeS Location: 793 5-8820 bp Feature: gene Location: 8828-9523 bp Feature: domain Description: OmpR Location: 8831-9506 bp Feature: domain Description: OmpR Location: 883 1-9506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-Retrons, BaeS (COG0642), OmpR (COG0745)

Seq: AUFC01000052.1 Anaerovorax odorimutans DSM 5092 K292DRAFT_scaffold00049.49_C, whole genome shotgun sequence (2058 bp)
Overview 1 RT 1: 173-2047 bp Neighborhood of RT #1 [173, 2047] RVT-GII GIIM Feature: gene Location: 173-1417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377-1034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377-1034 bp Feature: domain Description: GIIM Note: maturase Location: 1115-1331 bp Feature: domain Description: GIIM Note: maturase Location: 1115-1331 bp Feature: gene Location: 1874-2047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)