myRT

myRT report for GCA_000426765.1_ASM42676v1

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Seq: KE384566.1 Vibrio litoralis DSM 17657 genomic scaffold K358DRAFT_scaffold00001.1, whole genome shotgun sequence (706189 bp)
Overview 1 RT 1: 348759-354155 bp Neighborhood of RT #1 [348759, 354155] HTH_17 COG5545 RVT-UG9 PRK05755 PRK14975 Feature: gene Location: 348759-348974 bp Feature: domain Description: HTH_17 Location: 348813-348954 bp Feature: domain Description: HTH_1 7 Location: 34881 3-348954 bp Feature: gene Location: 349001-350269 bp Feature: domain Description: COG5545 Location: 349286-350093 bp Feature: domain Description: COG5545 Location: 349286-350093 bp Feature: gene Location: 350492-352144 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 350714-351347 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 35071 4-351 347 bp Feature: gene Location: 352137-353687 bp Feature: domain Description: PRK05755 Location: 352539-352704 bp Feature: domain Description: PRK05755 Location: 352539-352704 bp Feature: domain Description: PRK14975 Location: 352878-353631 bp Feature: domain Description: PRK1 4975 Location: 352878-353631 bp Feature: gene Location: 354009-354155 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), COG5545 (Predicted P-loop ATPase and inactivated derivatives ), RVT-UG9, PRK05755 (DNA polymerase I; Provisional), PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional)

Seq: KE384568.1 Vibrio litoralis DSM 17657 genomic scaffold K358DRAFT_scaffold00007.7, whole genome shotgun sequence (175666 bp)
Overview 1 RT 1: 15707-21704 bp Neighborhood of RT #1 [15707, 21706] DUF2188 RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 15707-16084 bp Feature: gene Location: 16687-16914 bp Feature: domain Description: DUF2188 Location: 16705-16885 bp Feature: domain Description: DUF2 188 Location: 16705-16885 bp Feature: gene Location: 17013-18680 bp Feature: domain Description: RVT_N Location: 17064-17307 bp Feature: domain Description: RVT_N Location: 17064-17307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17352-17997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17352 -17997 bp Feature: domain Description: GIIM Note: maturase Location: 18048-18282 bp Feature: domain Description: GIIM Note: maturase Location: 18048-182 82 bp Feature: domain Description: HNHc Note: nucleases Location: 18507-18660 bp Feature: domain Description: HNHc Note: nucleases Location: 18507-18660 bp Feature: gene Location: 19710-21353 bp Feature: domain Description: groEL Location: 19716-21336 bp Feature: domain Description: groEL Location: 19716-2 1336 bp Feature: gene Location: 21416-21706 bp Feature: domain Description: groES Location: 21419-21704 bp Feature: domain Description: groES Location: 2 1419-2 1704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)

Seq: AUFZ01000003.1 Vibrio litoralis DSM 17657 K358DRAFT_scaffold00012.12_C, whole genome shotgun sequence (96817 bp)
Overview 1 RT 1: 92079-95502 bp Neighborhood of RT #1 [92079, 95606] RelE RVT-GII GIIM COG5421 Feature: gene Location: 92079-92360 bp Feature: domain Description: RelE Location: 92085-92325 bp Feature: domain Description: RelE Location: 92085-923 25 bp Feature: gene Location: 92378-92728 bp Feature: gene Location: 92831-94135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93119-93761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 119-93 761 bp Feature: domain Description: GIIM Note: maturase Location: 93833-94040 bp Feature: domain Description: GIIM Note: maturase Location: 93 83 3 -94040 bp Feature: gene Location: 94336-94545 bp Feature: gene Location: 94749-95606 bp Feature: domain Description: COG5421 Location: 94803-95502 bp Feature: domain Description: COG5421 Location: 94803 -95502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelE (pfam06296), RVT-GII, GIIM (pfam08388), COG5421 (Transposase )