myRT

myRT report for GCA_000427625.1_ASM42762v1

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Seq: KE386569.1 Methylobacter luteus IMV-B-3098 genomic scaffold MetluDRAFT_scaffold1.1, whole genome shotgun sequence (4543119 bp)
Overview 1 RT 1: 1844367-1847130 bp 2 RT 2: 3068064-3071827 bp 3 RT 3: 3095612-3099066 bp 4 RT 4: 3108888-3113551 bp Neighborhood of RT #1 [1844367, 1847150] DUF4142 RVT-GII GIIM COG3791 Neighborhood of RT #2 [3068064, 3071827] RVT-Retrons HTH_XRE Neighborhood of RT #3 [3095612, 3099066] RVT-GII GIIM DDE_Tnp_1_3 Neighborhood of RT #4 [3108888, 3113637] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM IS285 Feature: gene Location: 1844367-1844903 bp Feature: domain Description: DUF4142 Location: 1844457-1844874 bp Feature: domain Description: DUF41 42 Location: 1 844457-1 844874 bp Feature: gene Location: 1844984-1845157 bp Feature: gene Location: 1845209-1845868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1845293-1845572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 845293-1 845572 bp Feature: domain Description: GIIM Note: maturase Location: 1845623-1845842 bp Feature: domain Description: GIIM Note: maturase Location: 1 845623-1 845842 bp Feature: gene Location: 1846141-1846584 bp Feature: gene Location: 1846737-1847150 bp Feature: domain Description: COG3791 Location: 1846758-1847130 bp Feature: domain Description: COG3791 Location: 1 846758-1 8471 30 bp Feature: gene Location: 3068064-3069362 bp Feature: gene Location: 3069363-3069545 bp Feature: gene Location: 3069546-3070715 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3069810-3070446 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 306981 0-3070446 bp Feature: gene Location: 3070904-3071395 bp Feature: domain Description: HTH_XRE Location: 3071075-3071228 bp Feature: domain Description: HTH_XRE Location: 3071 075-3071 228 bp Feature: gene Location: 3071528-3071827 bp Feature: gene Location: 3095612-3095809 bp Feature: gene Location: 3095910-3096068 bp Feature: gene Location: 3096172-3097500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3096463-3097123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3096463-30971 23 bp Feature: domain Description: GIIM Note: maturase Location: 3097192-3097399 bp Feature: domain Description: GIIM Note: maturase Location: 30971 92-3097399 bp Feature: gene Location: 3097677-3098561 bp Feature: domain Description: DDE_Tnp_1_3 Location: 3097989-3098448 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 3097989-3098448 bp Feature: gene Location: 3098803-3099066 bp Feature: gene Location: 3108888-3110459 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3109068-3109293 bp Feature: domain Description: LZ_Tnp_IS66 Location: 31 09068-31 09293 bp Feature: domain Description: zf-IS66 Location: 3109317-3109446 bp Feature: domain Description: zf-IS66 Location: 31 0931 7-31 09446 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3109491-3109635 bp Feature: domain Description: DDE_Tnp_IS66 Location: 31 09491 -31 09635 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3109653-3110262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 31 09653-31 1 0262 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3110313-3110421 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 31 1 031 3-31 1 0421 bp Feature: gene Location: 3110462-3110764 bp Feature: gene Location: 3111088-3112416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3111379-3112039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 1 379-31 1 2039 bp Feature: domain Description: GIIM Note: maturase Location: 3112108-3112315 bp Feature: domain Description: GIIM Note: maturase Location: 31 1 21 08-31 1 231 5 bp Feature: gene Location: 3112545-3112928 bp Feature: gene Location: 3112933-3113637 bp Feature: domain Description: IS285 Location: 3112951-3113551 bp Feature: domain Description: IS285 Location: 31 1 2951 -31 1 3551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4142 (pfam13628), RVT-GII, GIIM (pfam08388), COG3791 (Uncharacterized conserved protein ), RVT-Retrons, HTH_XRE (smart00530), DDE_Tnp_1_3 (pfam13612), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)
DDE_Tnp_IS66_C (pfam13817), IS285 (COG3328)

Seq: ATYJ01000014.1 Methylobacter luteus IMV-B-3098 MetluDRAFT_scaffold2.2_C, whole genome shotgun sequence (317982 bp)
Overview 1 RT 1: 31640-35149 bp Neighborhood of RT #1 [31640, 35163] RVT-GII hlyIII Feature: gene Location: 31640-31852 bp Feature: gene Location: 31892-32032 bp Feature: gene Location: 32178-33764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32586-33276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 586-332 76 bp Feature: gene Location: 33911-34072 bp Feature: gene Location: 34507-35163 bp Feature: domain Description: hlyIII Location: 34555-35149 bp Feature: domain Description: hlyIII Location: 34555-35149 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, hlyIII (TIGR01065)

Seq: ATYJ01000015.1 Methylobacter luteus IMV-B-3098 MetluDRAFT_scaffold3.3_C, whole genome shotgun sequence (96625 bp)
Overview 1 RT 1: 85552-93004 bp Neighborhood of RT #1 [85552, 93072] DUF4297 pfam13191 RVT-GII GIIM Phage_int_SAM_4 INT_IntI_C Feature: gene Location: 85552-89712 bp Feature: domain Description: DUF4297 Location: 85567-85840 bp Feature: domain Description: DUF4297 Location: 85567-85840 bp Feature: domain Description: pfam13191 Location: 86317-86488 bp Feature: domain Description: pfam13 191 Location: 863 17-86488 bp Feature: gene Location: 89778-90035 bp Feature: gene Location: 90317-91654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90668-91289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90668-91289 bp Feature: domain Description: GIIM Note: maturase Location: 91334-91553 bp Feature: domain Description: GIIM Note: maturase Location: 913 3 4-91553 bp Feature: gene Location: 91923-92150 bp Feature: gene Location: 92209-93072 bp Feature: domain Description: Phage_int_SAM_4 Location: 92221-92461 bp Feature: domain Description: Phage_int_SAM_4 Location: 92221-92461 bp Feature: domain Description: INT_IntI_C Location: 92503-93004 bp Feature: domain Description: INT_IntI_C Location: 92503 -93 004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4297 (pfam14130), pfam13191 (AAA_16;AAA ATPase domain), RVT-GII, GIIM (pfam08388), Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193)