myRT

myRT report for GCA_000427805.1_ASM42780v1

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Seq: ATYS01000002.1 Budvicia aquatica DSM 5075 = ATCC 35567 strain DSM 5075 YWEDRAFT_scaffold_1.2_C, whole genome shotgun sequence (353289 bp)
Overview 1 RT 1: 271956-278044 bp Neighborhood of RT #1 [271956, 278046] dgt PRK11477 RVT-Retrons galactar-dH20 Feature: gene Location: 271956-273452 bp Feature: domain Description: dgt Location: 271965-273447 bp Feature: domain Description: dgt Location: 271 965-273447 bp Feature: gene Location: 273684-274838 bp Feature: domain Description: PRK11477 Location: 273687-274836 bp Feature: domain Description: PRK1 1 477 Location: 273687-274836 bp Feature: gene Location: 275133-276131 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 275298-275853 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 275298-275853 bp Feature: gene Location: 276143-276346 bp Feature: gene Location: 276484-278046 bp Feature: domain Description: galactar-dH20 Location: 276517-278044 bp Feature: domain Description: galactar-dH20 Location: 27651 7-278044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dgt (PRK04926), PRK11477 (CdaR family transcriptional regulator), RVT-Retrons, galactar-dH20 (TIGR03248)

Seq: ATYS01000114.1 Budvicia aquatica DSM 5075 = ATCC 35567 strain DSM 5075 YWEDRAFT_scaffold_103.104_C, whole genome shotgun sequence (2376 bp)
Overview 1 RT 1: 86-2341 bp Neighborhood of RT #1 [86, 2341] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 86-1774 bp Feature: domain Description: RVT_N Location: 149-386 bp Feature: domain Description: RVT_N Location: 149-386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437-1079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437-1079 bp Feature: domain Description: GIIM Note: maturase Location: 1130-1364 bp Feature: domain Description: GIIM Note: maturase Location: 1130-1364 bp Feature: domain Description: HNHc Note: nucleases Location: 1595-1736 bp Feature: domain Description: HNHc Note: nucleases Location: 1595-1736 bp Feature: gene Location: 1940-2341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: ATYS01000018.1 Budvicia aquatica DSM 5075 = ATCC 35567 strain DSM 5075 YWEDRAFT_scaffold_13.14_C, whole genome shotgun sequence (120944 bp)
Overview 1 RT 1: 115845-120026 bp Neighborhood of RT #1 [115845, 120026] RVT-UG4 Feature: gene Location: 115845-116021 bp Feature: gene Location: 116138-116467 bp Feature: gene Location: 116647-117648 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 117001-117442 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 117001-117442 bp Feature: gene Location: 117654-118928 bp Feature: gene Location: 119133-120026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4

Seq: ATYS01000040.1 Budvicia aquatica DSM 5075 = ATCC 35567 strain DSM 5075 YWEDRAFT_scaffold_33.34_C, whole genome shotgun sequence (50366 bp)
Overview 1 RT 1: 5220-8783 bp Neighborhood of RT #1 [5220, 8809] RVT-UG4 InsA Feature: gene Location: 5220-6101 bp Feature: gene Location: 6399-7580 bp Feature: gene Location: 7615-8202 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7657-7996 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7657-7996 bp Feature: gene Location: 8289-8480 bp Feature: gene Location: 8618-8809 bp Feature: domain Description: InsA Location: 8645-8783 bp Feature: domain Description: InsA Location: 864 5-8783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, InsA (COG3677)

Seq: KE386589.1 Budvicia aquatica DSM 5075 = ATCC 35567 genomic scaffold YWEDRAFT_scaffold_46.47, whole genome shotgun sequence (35521 bp)
Overview 1 RT 1: 20076-24980 bp Neighborhood of RT #1 [20076, 24980] WzzB InsA RVT-UG4 Feature: gene Location: 20076-21200 bp Feature: domain Description: WzzB Location: 20160-21195 bp Feature: domain Description: WzzB Location: 20160-21195 bp Feature: gene Location: 21328-21735 bp Feature: domain Description: InsA Location: 21559-21706 bp Feature: domain Description: InsA Location: 215 5 9-21706 bp Feature: gene Location: 22027-22473 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 22030-22231 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 22030-22231 bp Feature: gene Location: 22500-23588 bp Feature: gene Location: 24762-24980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WzzB (COG3765), InsA (COG3677), RVT-UG4

Seq: ATYS01000063.1 Budvicia aquatica DSM 5075 = ATCC 35567 strain DSM 5075 YWEDRAFT_scaffold_54.55_C, whole genome shotgun sequence (22495 bp)
Overview 1 RT 1: 518-4662 bp Neighborhood of RT #1 [518, 4662] RVT-DGRs Avd_like Feature: gene Location: 518-1681 bp Feature: gene Location: 1821-2288 bp Feature: gene Location: 2633-3889 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2816-3518 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2816 -3518 bp Feature: gene Location: 3888-4289 bp Feature: domain Description: Avd_like Location: 3918-4248 bp Feature: domain Description: Avd_like Location: 3918-4248 bp Feature: gene Location: 4339-4662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: ATYS01000084.1 Budvicia aquatica DSM 5075 = ATCC 35567 strain DSM 5075 YWEDRAFT_scaffold_74.75_C, whole genome shotgun sequence (8915 bp)
Overview 1 RT 1: 3390-8865 bp Neighborhood of RT #1 [3390, 8912] M20_Acy1_YhaA-like PRK15023 RVT-GII GIIM zf-IS66 DDE_Tnp_IS66 Feature: gene Location: 3390-4568 bp Feature: domain Description: M20_Acy1_YhaA-like Location: 3408-4554 bp Feature: domain Description: M20_Acy1_YhaA-like Location: 3408-4554 bp Feature: gene Location: 4721-6088 bp Feature: domain Description: PRK15023 Location: 4724-6077 bp Feature: domain Description: PRK15023 Location: 47 24-607 7 bp Feature: gene Location: 6236-7465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6437-7091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6437 -7 091 bp Feature: domain Description: GIIM Note: maturase Location: 7169-7391 bp Feature: domain Description: GIIM Note: maturase Location: 7 169-7 391 bp Feature: gene Location: 7460-8086 bp Feature: gene Location: 8088-8912 bp Feature: domain Description: zf-IS66 Location: 8091-8157 bp Feature: domain Description: zf-IS66 Location: 8091-8157 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8202-8865 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8202-8865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT M20_Acy1_YhaA-like (cd08021), PRK15023 (L-serine deaminase; Provisional), RVT-GII, GIIM (pfam08388), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)

Seq: KE386591.1 Budvicia aquatica DSM 5075 = ATCC 35567 genomic scaffold YWEDRAFT_scaffold_77.78, whole genome shotgun sequence (13158 bp)
Overview 1 RT 1: 797-3677 bp 2 RT 2: 5742-8547 bp Neighborhood of RT #1 [797, 3677] RVT-UG4 Neighborhood of RT #2 [5742, 8576] RVT-UG4 RVT-UG4 InsA Feature: gene Location: 797-1987 bp Feature: gene Location: 2011-2148 bp Feature: gene Location: 2216-3007 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2570-2768 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2570-2768 bp Feature: gene Location: 3200-3502 bp Feature: gene Location: 3495-3677 bp Feature: gene Location: 5742-6761 bp Feature: gene Location: 6778-7143 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 6781-6934 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 678 1-6934 bp Feature: gene Location: 7158-7781 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7512-7692 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7512-7692 bp Feature: gene Location: 7950-8276 bp Feature: gene Location: 8394-8576 bp Feature: domain Description: InsA Location: 8409-8547 bp Feature: domain Description: InsA Location: 8 409-8 547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, InsA (COG3677)

Seq: ATYS01000098.1 Budvicia aquatica DSM 5075 = ATCC 35567 strain DSM 5075 YWEDRAFT_scaffold_87.88_C, whole genome shotgun sequence (6085 bp)
Overview 1 RT 1: 375-4566 bp Neighborhood of RT #1 [375, 4595] RVT-UG4 InsA Feature: gene Location: 375-1271 bp Feature: gene Location: 1476-2765 bp Feature: gene Location: 2788-3558 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2908-3349 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 29 08-3349 bp Feature: gene Location: 3971-4300 bp Feature: gene Location: 4413-4595 bp Feature: domain Description: InsA Location: 4431-4566 bp Feature: domain Description: InsA Location: 4431-4566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, InsA (COG3677)

Seq: ATYS01000101.1 Budvicia aquatica DSM 5075 = ATCC 35567 strain DSM 5075 YWEDRAFT_scaffold_90.91_C, whole genome shotgun sequence (5343 bp)
Overview 1 RT 1: 2163-5341 bp Neighborhood of RT #1 [2163, 5341] InsA RVT-UG4 Feature: gene Location: 2163-2360 bp Feature: domain Description: InsA Location: 2181-2331 bp Feature: domain Description: InsA Location: 2181-2331 bp Feature: gene Location: 2769-3071 bp Feature: gene Location: 3253-4275 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3607-4048 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3607-4048 bp Feature: gene Location: 4292-5341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsA (COG3677), RVT-UG4