myRT

myRT report for GCA_000428065.1_ASM42806v1

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Seq: ATZF01000001.1 Shimazuella kribbensis DSM 45090 A3GQDRAFT_scaffold_0.1_C, whole genome shotgun sequence (606309 bp)
Overview 1 RT 1: 208135-217679 bp 2 RT 2: 602209-606171 bp Neighborhood of RT #1 [208135, 217702] AAA_16 TPR_MalT DUF3109 group_II_RT_mat RVT-UG13 HsdM RMtype1_S_NmaSCMORF606P_TRD2-CR2_like RMtype1_S_NmaSCMORF606P_TRD2-CR2_like Neighborhood of RT #2 [602209, 606200] COOH-NH2_lig RVT-GII Intron_maturas2 HNHc Feature: gene Location: 208135-211599 bp Feature: domain Description: AAA_16 Location: 208165-208939 bp Feature: domain Description: AAA_1 6 Location: 2081 65-208939 bp Feature: domain Description: TPR_MalT Location: 210325-210544 bp Feature: domain Description: TPR_MalT Location: 21 0325-21 0544 bp Feature: domain Description: DUF3109 Location: 211081-211426 bp Feature: domain Description: DUF31 09 Location: 21 1 081 -21 1 426 bp Feature: gene Location: 211732-211926 bp Feature: gene Location: 212115-213860 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 212319-212523 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 21 231 9-21 2523 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 212622-213111 bp Feature: RT Description: RVT-UG1 3 Note: UG1 3 RT Location: 21 2622-21 31 1 1 bp Feature: gene Location: 214032-216431 bp Feature: domain Description: HsdM Location: 214041-215397 bp Feature: domain Description: HsdM Location: 21 4041 -21 5397 bp Feature: gene Location: 216425-217702 bp Feature: domain Description: RMtype1_S_NmaSCMORF606P_TRD2-CR2_like Location: 216512-217064 bp Feature: domain Description: RMtype1 _S_NmaSCMORF606P_TRD2-CR2_like Location: 21 651 2-21 7064 bp Feature: domain Description: RMtype1_S_NmaSCMORF606P_TRD2-CR2_like Location: 217379-217679 bp Feature: domain Description: RMtype1 _S_NmaSCMORF606P_TRD2-CR2_like Location: 21 7379-21 7679 bp Feature: gene Location: 602209-603561 bp Feature: domain Description: COOH-NH2_lig Location: 602776-603529 bp Feature: domain Description: COOH-NH2_lig Location: 602776-603529 bp Feature: gene Location: 604044-604211 bp Feature: gene Location: 604398-606200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 604662-605484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 604662-605484 bp Feature: domain Description: Intron_maturas2 Location: 605559-605871 bp Feature: domain Description: Intron_maturas2 Location: 605559-605871 bp Feature: domain Description: HNHc Note: nucleases Location: 606021-606171 bp Feature: domain Description: HNHc Note: nucleases Location: 606021 -6061 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_16 (pfam13191), TPR_MalT (pfam17874), DUF3109 (pfam11307), group_II_RT_mat (TIGR04416), RVT-UG13, HsdM (COG0286), RMtype1_S_NmaSCMORF606P_TRD2-CR2_like (cd17271), COOH-NH2_lig (pfam14395), RVT-GII, Intron_maturas2 (pfam01348)
HNHc (smart00507)

Seq: ATZF01000012.1 Shimazuella kribbensis DSM 45090 A3GQDRAFT_scaffold_10.11_C, whole genome shotgun sequence (174397 bp)
Overview 1 RT 1: 19438-26345 bp Neighborhood of RT #1 [19438, 26345] SWIM RVT-Retrons Feature: gene Location: 19438-21984 bp Feature: gene Location: 21996-23621 bp Feature: domain Description: SWIM Location: 23493-23601 bp Feature: domain Description: SWIM Location: 2 3493-2 3601 bp Feature: gene Location: 23638-25086 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24199-24817 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 4199-2 4817 bp Feature: gene Location: 25162-25488 bp Feature: gene Location: 26007-26345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SWIM (pfam04434), RVT-Retrons

Seq: ATZF01000013.1 Shimazuella kribbensis DSM 45090 A3GQDRAFT_scaffold_11.12_C, whole genome shotgun sequence (166479 bp)
Overview 1 RT 1: 163721-166341 bp Neighborhood of RT #1 [163721, 166370] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 163721-163909 bp Feature: gene Location: 164214-164381 bp Feature: gene Location: 164568-166370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164832-165654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16483 2-165654 bp Feature: domain Description: Intron_maturas2 Location: 165729-166041 bp Feature: domain Description: Intron_maturas2 Location: 165729-166041 bp Feature: domain Description: HNHc Note: nucleases Location: 166191-166341 bp Feature: domain Description: HNHc Note: nucleases Location: 166191-1663 41 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: ATZF01000022.1 Shimazuella kribbensis DSM 45090 A3GQDRAFT_scaffold_19.20_C, whole genome shotgun sequence (28099 bp)
Overview 1 RT 1: 263-6849 bp Neighborhood of RT #1 [263, 6857] RVT-GII Intron_maturas2 HNHc PRK05399 mutL Feature: gene Location: 263-430 bp Feature: gene Location: 617-2419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1703 bp Feature: domain Description: Intron_maturas2 Location: 1778-2090 bp Feature: domain Description: Intron_maturas2 Location: 1778-2090 bp Feature: domain Description: HNHc Note: nucleases Location: 2240-2390 bp Feature: domain Description: HNHc Note: nucleases Location: 224 0-2390 bp Feature: gene Location: 2608-5001 bp Feature: domain Description: PRK05399 Location: 2611-4993 bp Feature: domain Description: PRK05399 Location: 2611-4 993 bp Feature: gene Location: 5013-6857 bp Feature: domain Description: mutL Location: 5022-6849 bp Feature: domain Description: mutL Location: 5022-684 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK05399 (DNA mismatch repair protein MutS; Provisional), mutL (PRK00095)

Seq: ATZF01000029.1 Shimazuella kribbensis DSM 45090 A3GQDRAFT_scaffold_25.26_C, whole genome shotgun sequence (15077 bp)
Overview 1 RT 1: 263-3712 bp Neighborhood of RT #1 [263, 3712] RVT-GII Intron_maturas2 HNHc SR_ResInv HTH_49 Feature: gene Location: 263-430 bp Feature: gene Location: 617-2419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1703 bp Feature: domain Description: Intron_maturas2 Location: 1778-2090 bp Feature: domain Description: Intron_maturas2 Location: 1778-2090 bp Feature: domain Description: HNHc Note: nucleases Location: 2240-2390 bp Feature: domain Description: HNHc Note: nucleases Location: 2240-2390 bp Feature: gene Location: 2527-3099 bp Feature: domain Description: SR_ResInv Location: 2533-2905 bp Feature: domain Description: SR_ResInv Location: 25 33-2905 bp Feature: domain Description: HTH_49 Location: 2980-3061 bp Feature: domain Description: HTH_49 Location: 2980-3061 bp Feature: gene Location: 3386-3712 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SR_ResInv (cd03768), HTH_49 (pfam18010)