myRT

myRT report for GCA_000428905.1_ASM42890v1

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Seq: KE386816.1 Glaciecola pallidula DSM 14239 = ACAM 615 genomic scaffold G399DRAFT_scaffold00004.4, whole genome shotgun sequence (340923 bp)
Overview 1 RT 1: 211390-214755 bp Neighborhood of RT #1 [211390, 214844] RVT-GII GIIM RVT-GII HEPN_AbiU2 Feature: gene Location: 211390-211764 bp Feature: gene Location: 211879-212256 bp Feature: gene Location: 212317-213216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 212323-212779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 2323-21 2779 bp Feature: domain Description: GIIM Note: maturase Location: 212824-213037 bp Feature: domain Description: GIIM Note: maturase Location: 21 2824-21 3037 bp Feature: gene Location: 213242-213649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 213518-213635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 351 8-21 3635 bp Feature: gene Location: 213723-213902 bp Feature: gene Location: 214248-214844 bp Feature: domain Description: HEPN_AbiU2 Location: 214305-214755 bp Feature: domain Description: HEPN_AbiU2 Location: 21 4305-21 4755 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HEPN_AbiU2 (pfam18734)

Seq: AUAV01000008.1 Glaciecola pallidula DSM 14239 = ACAM 615 strain DSM 14239 G399DRAFT_scaffold00005.5_C, whole genome shotgun sequence (266234 bp)
Overview 1 RT 1: 82689-90460 bp Neighborhood of RT #1 [82689, 90462] COG0610 RVT-Retrons Arm-DNA-bind_3 INT_P4_C TIGR00255 Feature: gene Location: 82689-82835 bp Feature: gene Location: 83168-85978 bp Feature: domain Description: COG0610 Location: 83174-85880 bp Feature: domain Description: COG0610 Location: 83174-85880 bp Feature: gene Location: 86059-87807 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86203-86824 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 862 03-8682 4 bp Feature: gene Location: 88142-89431 bp Feature: domain Description: Arm-DNA-bind_3 Location: 88202-88463 bp Feature: domain Description: Arm-DNA-bind_3 Location: 882 02 -88463 bp Feature: domain Description: INT_P4_C Location: 88847-89399 bp Feature: domain Description: INT_P4_C Location: 88847-89399 bp Feature: gene Location: 89599-90462 bp Feature: domain Description: TIGR00255 Location: 89602-90460 bp Feature: domain Description: TIGR002 55 Location: 89602 -90460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-Retrons, Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), TIGR00255 (TIGR00255 family protein)

Seq: AUAV01000015.1 Glaciecola pallidula DSM 14239 = ACAM 615 strain DSM 14239 G399DRAFT_scaffold00011.11_C, whole genome shotgun sequence (161430 bp)
Overview 1 RT 1: 4787-7952 bp Neighborhood of RT #1 [4787, 7952] RVT-UG4 Feature: gene Location: 4787-4969 bp Feature: gene Location: 5390-5545 bp Feature: gene Location: 5851-6897 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 6190-6637 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 6190-663 7 bp Feature: gene Location: 7235-7783 bp Feature: gene Location: 7803-7952 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4

Seq: AUAV01000027.1 Glaciecola pallidula DSM 14239 = ACAM 615 strain DSM 14239 G399DRAFT_scaffold00021.21_C, whole genome shotgun sequence (11573 bp)
Overview 1 RT 1: 9490-11183 bp Neighborhood of RT #1 [9490, 11263] PEP-CTERM RVT-UG4 Feature: gene Location: 9490-9723 bp Feature: gene Location: 9994-10587 bp Feature: domain Description: PEP-CTERM Location: 10507-10570 bp Feature: domain Description: PEP-CTERM Location: 10507-10570 bp Feature: gene Location: 10715-11263 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 10739-11183 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 10739-11183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PEP-CTERM, RVT-UG4