myRT

myRT report for GCA_000429945.1_ASM42994v1

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Seq: KE386995.1 Desulfobulbus japonicus DSM 18378 genomic scaffold G493DRAFT_scaffold00009.9, whole genome shotgun sequence (154861 bp)
Overview 1 RT 1: 3-6639 bp Neighborhood of RT #1 [3, 6653] RVT-GII AcrB Feature: gene Location: 3-242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2-240 bp Feature: gene Location: 1353-2477 bp Feature: gene Location: 3432-6653 bp Feature: domain Description: AcrB Location: 3489-6639 bp Feature: domain Description: AcrB Location: 3489-6639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AcrB (COG0841)

Seq: AUCV01000013.1 Desulfobulbus japonicus DSM 18378 G493DRAFT_scaffold00010.10_C, whole genome shotgun sequence (148817 bp)
Overview 1 RT 1: 439-3605 bp Neighborhood of RT #1 [439, 3605] COG3981 RVT-GII RVT-GII CtpA Feature: gene Location: 439-882 bp Feature: domain Description: COG3981 Location: 520-820 bp Feature: domain Description: COG3981 Location: 52 0-82 0 bp Feature: gene Location: 917-1066 bp Feature: gene Location: 1451-2092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1457-1913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1457-1913 bp Feature: gene Location: 2079-2318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2100-2316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 100-2 316 bp Feature: gene Location: 2823-3233 bp Feature: domain Description: CtpA Location: 2895-3225 bp Feature: domain Description: CtpA Location: 2 895-32 2 5 bp Feature: gene Location: 3327-3605 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3981 (Predicted acetyltransferase ), RVT-GII, CtpA (COG0793)

Seq: AUCV01000021.1 Desulfobulbus japonicus DSM 18378 G493DRAFT_scaffold00017.17_C, whole genome shotgun sequence (109709 bp)
Overview 1 RT 1: 99086-105791 bp Neighborhood of RT #1 [99086, 105949] HTH_32 RVT-GII DUF3670 HepA COG4279 Feature: gene Location: 99086-99544 bp Feature: domain Description: HTH_32 Location: 99221-99410 bp Feature: domain Description: HTH_3 2 Location: 99221-99410 bp Feature: gene Location: 100077-100862 bp Feature: gene Location: 101078-101854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101087-101630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101087-10163 0 bp Feature: gene Location: 102210-104888 bp Feature: domain Description: DUF3670 Location: 102924-103314 bp Feature: domain Description: DUF3 670 Location: 102924-103 3 14 bp Feature: domain Description: HepA Location: 103425-104877 bp Feature: domain Description: HepA Location: 103 425-104877 bp Feature: gene Location: 104912-105949 bp Feature: domain Description: COG4279 Location: 105044-105791 bp Feature: domain Description: COG4279 Location: 105044-105791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), RVT-GII, DUF3670 (pfam12419), HepA (COG0553), COG4279 (Uncharacterized conserved protein, contains Zn finger domain )

Seq: AUCV01000051.1 Desulfobulbus japonicus DSM 18378 G493DRAFT_scaffold00044.44_C, whole genome shotgun sequence (41787 bp)
Overview 1 RT 1: 3-3163 bp Neighborhood of RT #1 [3, 3228] RVT-GII MobB FdhD-NarQ MobA Feature: gene Location: 3-512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15-153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15-153 bp Feature: gene Location: 1093-1707 bp Feature: domain Description: MobB Location: 1216-1684 bp Feature: domain Description: MobB Location: 1216-1684 bp Feature: gene Location: 1816-3228 bp Feature: domain Description: FdhD-NarQ Location: 1891-2578 bp Feature: domain Description: FdhD-NarQ Location: 1891-2578 bp Feature: domain Description: MobA Location: 2614-3163 bp Feature: domain Description: MobA Location: 2614 -3163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, MobB (pfam03205), FdhD-NarQ (pfam02634), MobA (COG0746)

Seq: AUCV01000061.1 Desulfobulbus japonicus DSM 18378 G493DRAFT_scaffold00054.54_C, whole genome shotgun sequence (30366 bp)
Overview 1 RT 1: 25374-29280 bp Neighborhood of RT #1 [25374, 29280] DLH Peptidase_S9 Glyoxalase_3 RVT-GII RVT-GII Feature: gene Location: 25374-26351 bp Feature: domain Description: DLH Location: 25662-25887 bp Feature: domain Description: DLH Location: 25 662-25 887 bp Feature: domain Description: Peptidase_S9 Location: 26028-26301 bp Feature: domain Description: Peptidase_S9 Location: 26028-26301 bp Feature: gene Location: 26438-27079 bp Feature: domain Description: Glyoxalase_3 Location: 26456-26672 bp Feature: domain Description: Glyoxalase_3 Location: 2645 6-26672 bp Feature: gene Location: 27592-27903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27595-27877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275 95 -27877 bp Feature: gene Location: 27893-28423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28022-28412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28022-28412 bp Feature: gene Location: 28545-28679 bp Feature: gene Location: 29023-29280 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DLH (pfam01738), Peptidase_S9 (pfam00326), Glyoxalase_3 (pfam13468), RVT-GII

Seq: AUCV01000070.1 Desulfobulbus japonicus DSM 18378 G493DRAFT_scaffold00062.62_C, whole genome shotgun sequence (16238 bp)
Overview 1 RT 1: 11182-16236 bp Neighborhood of RT #1 [11182, 16236] COG3943 RVT-GII GIIM Feature: gene Location: 11182-12255 bp Feature: gene Location: 12282-13337 bp Feature: domain Description: COG3943 Location: 12360-13329 bp Feature: domain Description: COG3943 Location: 1236 0-13329 bp Feature: gene Location: 14088-15434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14349-14970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14349-14970 bp Feature: domain Description: GIIM Note: maturase Location: 15024-15231 bp Feature: domain Description: GIIM Note: maturase Location: 15024-15231 bp Feature: gene Location: 15441-15674 bp Feature: gene Location: 15919-16236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-GII, GIIM (pfam08388)

Seq: AUCV01000075.1 Desulfobulbus japonicus DSM 18378 G493DRAFT_scaffold00067.67_C, whole genome shotgun sequence (9326 bp)
Overview 1 RT 1: 1952-9324 bp Neighborhood of RT #1 [1952, 9324] RVT-GII GIIM RVT_N RVT-GII DUF1129 YcxB RVT-GII GIIM opgC Feature: gene Location: 1952-2257 bp Feature: gene Location: 2388-2960 bp Feature: gene Location: 3101-3718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3107-3215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3107 -3215 bp Feature: domain Description: GIIM Note: maturase Location: 3269-3500 bp Feature: domain Description: GIIM Note: maturase Location: 3269-3500 bp Feature: gene Location: 3756-4334 bp Feature: domain Description: RVT_N Location: 3762-3945 bp Feature: domain Description: RVT_N Location: 37 62-3945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3996-4161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3996-4161 bp Feature: gene Location: 4383-4556 bp Feature: gene Location: 4914-5438 bp Feature: domain Description: DUF1129 Location: 4983-5169 bp Feature: domain Description: DUF1129 Location: 4983-5169 bp Feature: domain Description: YcxB Location: 5226-5409 bp Feature: domain Description: YcxB Location: 5226-5409 bp Feature: gene Location: 5619-5792 bp Feature: gene Location: 6094-7419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6364-6982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6364-6982 bp Feature: domain Description: GIIM Note: maturase Location: 7033-7264 bp Feature: domain Description: GIIM Note: maturase Location: 7 033-7 264 bp Feature: gene Location: 7531-8997 bp Feature: domain Description: opgC Location: 7783-8938 bp Feature: domain Description: opgC Location: 7 7 83-8938 bp Feature: gene Location: 9187-9324 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), DUF1129 (pfam06570), YcxB (pfam14317), opgC (PRK03854)

Seq: AUCV01000079.1 Desulfobulbus japonicus DSM 18378 G493DRAFT_scaffold00071.71_C, whole genome shotgun sequence (6719 bp)
Overview 1 RT 1: 3095-5449 bp Neighborhood of RT #1 [3095, 5449] RVT-GII Feature: gene Location: 3095-3253 bp Feature: gene Location: 3472-4047 bp Feature: gene Location: 4183-4686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4339-4648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4339-4648 bp Feature: gene Location: 4689-5000 bp Feature: gene Location: 5126-5449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: KE387001.1 Desulfobulbus japonicus DSM 18378 genomic scaffold G493DRAFT_scaffold00073.73, whole genome shotgun sequence (6401 bp)
Overview 1 RT 1: 1953-5158 bp Neighborhood of RT #1 [1953, 5158] PRiA4_ORF3 RVT-GII GIIM Feature: gene Location: 1953-2219 bp Feature: gene Location: 2375-2794 bp Feature: domain Description: PRiA4_ORF3 Location: 2441-2771 bp Feature: domain Description: PRiA4_ORF3 Location: 2441-2771 bp Feature: gene Location: 2928-3971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3024-3618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3024-3618 bp Feature: domain Description: GIIM Note: maturase Location: 3699-3906 bp Feature: domain Description: GIIM Note: maturase Location: 369 9 -39 06 bp Feature: gene Location: 4421-4642 bp Feature: gene Location: 4862-5158 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRiA4_ORF3 (pfam07929), RVT-GII, GIIM (pfam08388)

Seq: KE387002.1 Desulfobulbus japonicus DSM 18378 genomic scaffold G493DRAFT_scaffold00081.81, whole genome shotgun sequence (7183 bp)
Overview 1 RT 1: 343-3620 bp Neighborhood of RT #1 [343, 3620] YkfC RVT-GII GIIM Feature: gene Location: 343-738 bp Feature: gene Location: 880-1344 bp Feature: gene Location: 1443-2348 bp Feature: domain Description: YkfC Location: 1614-1728 bp Feature: domain Description: YkfC Location: 1614-1728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1728-1902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1728-1902 bp Feature: domain Description: GIIM Note: maturase Location: 1950-2142 bp Feature: domain Description: GIIM Note: maturase Location: 1950-2142 bp Feature: gene Location: 2621-2992 bp Feature: gene Location: 3306-3620 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII, GIIM (pfam08388)

Seq: AUCV01000097.1 Desulfobulbus japonicus DSM 18378 G493DRAFT_scaffold00086.86_C, whole genome shotgun sequence (4602 bp)
Overview 1 RT 1: 231-2947 bp Neighborhood of RT #1 [231, 3270] RVT-GII VapI PRK14968 Feature: gene Location: 231-683 bp Feature: gene Location: 1049-1237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1103-1229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11 03-1229 bp Feature: gene Location: 2011-2334 bp Feature: domain Description: VapI Location: 2029-2323 bp Feature: domain Description: VapI Location: 2029-2323 bp Feature: gene Location: 2572-3270 bp Feature: domain Description: PRK14968 Location: 2749-2947 bp Feature: domain Description: PRK14968 Location: 2749-2947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, VapI (COG3093), PRK14968 (putative methyltransferase; Provisional)