myRT

myRT report for GCA_000430585.1_ASM43058v1

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Seq: AUMH01000002.1 Alicyclobacillus herbarius DSM 13609 H522DRAFT_scaffold00002.2_C, whole genome shotgun sequence (209224 bp)
Overview 1 RT 1: 196064-201308 bp Neighborhood of RT #1 [196064, 201316] COG4584 PRK09183 RVT-GII RVT-GII RVT-GII AbrB Zn_ADH6 Feature: gene Location: 196064-197566 bp Feature: domain Description: COG4584 Location: 196094-196925 bp Feature: domain Description: COG4584 Location: 1 96094-1 96925 bp Feature: gene Location: 197563-198291 bp Feature: domain Description: PRK09183 Location: 197575-198265 bp Feature: domain Description: PRK091 83 Location: 1 97575-1 98265 bp Feature: gene Location: 198312-198587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198405-198516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 98405-1 9851 6 bp Feature: gene Location: 198659-199186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198662-199091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 98662-1 99091 bp Feature: gene Location: 199188-199394 bp Feature: gene Location: 199451-199771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199550-199748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 99550-1 99748 bp Feature: gene Location: 199801-200022 bp Feature: domain Description: AbrB Location: 199825-199954 bp Feature: domain Description: AbrB Location: 1 99825-1 99954 bp Feature: gene Location: 200261-201316 bp Feature: domain Description: Zn_ADH6 Location: 200264-201308 bp Feature: domain Description: Zn_ADH6 Location: 200264-201 308 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional), RVT-GII, AbrB (pfam05145), Zn_ADH6 (cd08260)

Seq: AUMH01000008.1 Alicyclobacillus herbarius DSM 13609 H522DRAFT_scaffold00008.8_C, whole genome shotgun sequence (141467 bp)
Overview 1 RT 1: 111221-116131 bp Neighborhood of RT #1 [111221, 116131] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 RVT_N RVT-GII YkfC Feature: gene Location: 111221-112810 bp Feature: domain Description: LZ_Tnp_IS66 Location: 111329-111548 bp Feature: domain Description: LZ_Tnp_IS66 Location: 11132 9-111548 bp Feature: domain Description: zf-IS66 Location: 111572-111704 bp Feature: domain Description: zf-IS66 Location: 111572 -111704 bp Feature: domain Description: DDE_Tnp_IS66 Location: 111767-112622 bp Feature: domain Description: DDE_Tnp_IS66 Location: 111767-112 62 2 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 112643-112763 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 112 643-112 763 bp Feature: gene Location: 112875-113072 bp Feature: domain Description: TnpB_IS66 Location: 112878-113037 bp Feature: domain Description: TnpB_IS66 Location: 112 878-113037 bp Feature: gene Location: 113181-115046 bp Feature: domain Description: RVT_N Location: 113325-113556 bp Feature: domain Description: RVT_N Location: 11332 5-113556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113604-114258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113604-1142 58 bp Feature: domain Description: YkfC Location: 114390-114528 bp Feature: domain Description: YkfC Location: 114390-11452 8 bp Feature: gene Location: 115069-115518 bp Feature: gene Location: 115769-116131 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: AUMH01000037.1 Alicyclobacillus herbarius DSM 13609 H522DRAFT_scaffold00036.36_C, whole genome shotgun sequence (12670 bp)
Overview 1 RT 1: 81-2306 bp Neighborhood of RT #1 [81, 2452] RVT-UNC DEXHc_Snf DEXHc_Snf KOG1000 Feature: gene Location: 81-650 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 336-387 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3 3 6-3 87 bp Feature: gene Location: 725-937 bp Feature: gene Location: 1226-2452 bp Feature: domain Description: DEXHc_Snf Location: 1427-1622 bp Feature: domain Description: DEXHc_Snf Location: 1427-1622 bp Feature: domain Description: DEXHc_Snf Location: 1634-1967 bp Feature: domain Description: DEXHc_Snf Location: 163 4-1967 bp Feature: domain Description: KOG1000 Location: 2036-2306 bp Feature: domain Description: KOG1000 Location: 203 6-23 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons/RVT-GII(RVT-UNC), DEXHc_Snf (cd17919), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily )

Seq: AUMH01000052.1 Alicyclobacillus herbarius DSM 13609 H522DRAFT_scaffold00051.51_C, whole genome shotgun sequence (2118 bp)
Overview 1 RT 1: 217-2117 bp Neighborhood of RT #1 [217, 2117] RVT-GII GIIM Feature: gene Location: 217-1530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 514-1150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 514 -1150 bp Feature: domain Description: GIIM Note: maturase Location: 1225-1444 bp Feature: domain Description: GIIM Note: maturase Location: 1225-14 4 4 bp Feature: gene Location: 1848-2117 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)