myRT

myRT report for GCA_000430785.1_ASM43078v1

Download annotations/find similar RTs

Seq: AUMR01000003.1 Bacillus panaciterrae DSM 19096 H540DRAFT_scaffold00002.2_C, whole genome shotgun sequence (283148 bp)
Overview 1 RT 1: 179521-187355 bp Neighborhood of RT #1 [179521, 187357] polC RVT-GII GIIM HNHc polC PRK00092 Feature: gene Location: 179521-183351 bp Feature: domain Description: polC Location: 179542-183310 bp Feature: domain Description: polC Location: 1 79542-1 8331 0 bp Feature: gene Location: 183872-184006 bp Feature: gene Location: 184265-185995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184367-185084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 84367-1 85084 bp Feature: domain Description: GIIM Note: maturase Location: 185162-185381 bp Feature: domain Description: GIIM Note: maturase Location: 1 851 62-1 85381 bp Feature: domain Description: HNHc Note: nucleases Location: 185732-185900 bp Feature: domain Description: HNHc Note: nucleases Location: 1 85732-1 85900 bp Feature: gene Location: 186135-186626 bp Feature: domain Description: polC Location: 186138-186624 bp Feature: domain Description: polC Location: 1 861 38-1 86624 bp Feature: gene Location: 186890-187357 bp Feature: domain Description: PRK00092 Location: 186893-187355 bp Feature: domain Description: PRK00092 Location: 1 86893-1 87355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT polC (TIGR00354), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK00092 (ribosome maturation protein RimP; Reviewed)

Seq: KE387248.1 Bacillus panaciterrae DSM 19096 genomic scaffold H540DRAFT_scaffold00006.6, whole genome shotgun sequence (142230 bp)
Overview 1 RT 1: 103020-107351 bp Neighborhood of RT #1 [103020, 107356] PRK13927 PRK00024 RVT-GII Intron_maturas2 RadC Feature: gene Location: 103020-104039 bp Feature: domain Description: PRK13927 Location: 103038-104031 bp Feature: domain Description: PRK1392 7 Location: 103038-104031 bp Feature: gene Location: 104187-104423 bp Feature: domain Description: PRK00024 Location: 104226-104421 bp Feature: domain Description: PRK0002 4 Location: 1042 2 6-10442 1 bp Feature: gene Location: 104494-106365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104818-105649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104818-105649 bp Feature: domain Description: Intron_maturas2 Location: 105730-106045 bp Feature: domain Description: Intron_maturas2 Location: 105730-106045 bp Feature: gene Location: 106508-106732 bp Feature: gene Location: 106865-107356 bp Feature: domain Description: RadC Location: 106883-107351 bp Feature: domain Description: RadC Location: 106883-107351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13927 (rod shape-determining protein MreB; Provisional), PRK00024 (DNA repair protein RadC), RVT-GII, Intron_maturas2 (pfam01348), RadC (pfam04002)

Seq: AUMR01000034.1 Bacillus panaciterrae DSM 19096 H540DRAFT_scaffold00024.24_C, whole genome shotgun sequence (73792 bp)
Overview 1 RT 1: 30198-36840 bp 2 RT 2: 71189-73728 bp Neighborhood of RT #1 [30198, 36878] PRK06749 RVT-Retrons AAA_15 TOPRIM_OLD SIR2_Af2 Neighborhood of RT #2 [71189, 73790] SRPBCC_CalC_Aha1-like HTH_ARSR RVT-GII Intron_maturas2 HNHc Feature: gene Location: 30198-31487 bp Feature: domain Description: PRK06749 Location: 30201-31479 bp Feature: domain Description: PRK06749 Location: 3 0201-3 1479 bp Feature: gene Location: 31747-32091 bp Feature: gene Location: 32613-33650 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32736-33309 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 273 6-3 3 3 09 bp Feature: gene Location: 33820-35835 bp Feature: domain Description: AAA_15 Location: 33823-34777 bp Feature: domain Description: AAA_15 Location: 3 3 823 -3 4777 bp Feature: domain Description: TOPRIM_OLD Location: 34918-35167 bp Feature: domain Description: TOPRIM_OLD Location: 3 4918-3 5167 bp Feature: gene Location: 36654-36878 bp Feature: domain Description: SIR2_Af2 Location: 36663-36840 bp Feature: domain Description: SIR2_Af2 Location: 3 6663 -3 6840 bp Feature: gene Location: 71189-71704 bp Feature: domain Description: SRPBCC_CalC_Aha1-like Location: 71237-71693 bp Feature: domain Description: SRPBCC_CalC_Aha1-like Location: 7123 7-71693 bp Feature: gene Location: 71734-72120 bp Feature: domain Description: HTH_ARSR Location: 71815-72016 bp Feature: domain Description: HTH_ARSR Location: 71815-72016 bp Feature: gene Location: 72882-73790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72903-73032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72903 -73 03 2 bp Feature: domain Description: Intron_maturas2 Location: 73125-73431 bp Feature: domain Description: Intron_maturas2 Location: 73 125-73 43 1 bp Feature: domain Description: HNHc Note: nucleases Location: 73581-73728 bp Feature: domain Description: HNHc Note: nucleases Location: 73 581-73 728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06749 (replicative DNA helicase; Provisional), RVT-Retrons, AAA_15 (pfam13175), TOPRIM_OLD (cd01026), SIR2_Af2 (cd01413), SRPBCC_CalC_Aha1-like (cd07814), HTH_ARSR (smart00418), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: KE387255.1 Bacillus panaciterrae DSM 19096 genomic scaffold H540DRAFT_scaffold00032.32, whole genome shotgun sequence (57347 bp)
Overview 1 RT 1: 25120-31900 bp Neighborhood of RT #1 [25120, 32772] HepA RVT-GII GIIM HNHc COG4715 SNF2_assoc DEXQc_arch_SWI2_SNF2 Glycos_transf_2 Feature: gene Location: 25120-26271 bp Feature: domain Description: HepA Location: 25126-26263 bp Feature: domain Description: HepA Location: 25126-26263 bp Feature: gene Location: 26388-26555 bp Feature: gene Location: 26556-28460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26856-27567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26856-27567 bp Feature: domain Description: GIIM Note: maturase Location: 27657-27873 bp Feature: domain Description: GIIM Note: maturase Location: 27657-27873 bp Feature: domain Description: HNHc Note: nucleases Location: 28140-28368 bp Feature: domain Description: HNHc Note: nucleases Location: 2814 0-28368 bp Feature: gene Location: 29210-31333 bp Feature: domain Description: COG4715 Location: 29381-29639 bp Feature: domain Description: COG4 715 Location: 29381-29639 bp Feature: domain Description: SNF2_assoc Location: 30074-31190 bp Feature: domain Description: SNF2_assoc Location: 30074 -31190 bp Feature: domain Description: DEXQc_arch_SWI2_SNF2 Location: 31202-31304 bp Feature: domain Description: DEXQc_arch_SWI2_SNF2 Location: 31202-31304 bp Feature: gene Location: 31489-32772 bp Feature: domain Description: Glycos_transf_2 Location: 31507-31900 bp Feature: domain Description: Glycos_transf_2 Location: 31507-31900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HepA (COG0553), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG4715 (Uncharacterized conserved protein, contains Zn finger domain ), SNF2_assoc (pfam08455), DEXQc_arch_SWI2_SNF2 (cd18012), Glycos_transf_2 (pfam00535)

Seq: AUMR01000053.1 Bacillus panaciterrae DSM 19096 H540DRAFT_scaffold00039.39_C, whole genome shotgun sequence (38628 bp)
Overview 1 RT 1: 36214-38540 bp Neighborhood of RT #1 [36214, 38626] Tas RVT-GII GIIM Feature: gene Location: 36214-37251 bp Feature: domain Description: Tas Location: 36235-37177 bp Feature: domain Description: Tas Location: 36235 -37177 bp Feature: gene Location: 37563-37832 bp Feature: gene Location: 38080-38361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38107-38248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38107-38248 bp Feature: gene Location: 38414-38626 bp Feature: domain Description: GIIM Note: maturase Location: 38417-38540 bp Feature: domain Description: GIIM Note: maturase Location: 38417-385 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tas (COG0667), RVT-GII, GIIM (pfam08388)

Seq: AUMR01000132.1 Bacillus panaciterrae DSM 19096 H540DRAFT_scaffold00115.115_C, whole genome shotgun sequence (7782 bp)
Overview 1 RT 1: 63-2061 bp Neighborhood of RT #1 [63, 2061] RVT_N RVT-GII PRK06771 Feature: gene Location: 63-956 bp Feature: domain Description: RVT_N Location: 111-357 bp Feature: domain Description: RVT_N Location: 111-357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 411-930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 411-930 bp Feature: gene Location: 1585-1848 bp Feature: domain Description: PRK06771 Location: 1606-1846 bp Feature: domain Description: PRK06 771 Location: 16 06 -1846 bp Feature: gene Location: 1897-2061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, PRK06771 (hypothetical protein; Provisional)

Seq: AUMR01000203.1 Bacillus panaciterrae DSM 19096 H540DRAFT_scaffold00186.186_C, whole genome shotgun sequence (1224 bp)
Overview 1 RT 1: 3-1223 bp Neighborhood of RT #1 [3, 1223] RVT-GII Feature: gene Location: 3-929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273-930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27 3-930 bp Feature: gene Location: 1080-1223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII