myRT

myRT report for GCA_000431175.1_MGS59

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Seq: HF988293.1 Clostridium bolteae CAG:59 genomic scaffold, scf58, whole genome shotgun sequence (129072 bp)
Overview 1 RT 1: 55321-61618 bp Neighborhood of RT #1 [55321, 61977] RVT-GII Intron_maturas2 pilus_cpaB FlhG Feature: gene Location: 55321-55482 bp Feature: gene Location: 55701-57320 bp Feature: gene Location: 57860-59677 bp Ori: CCY00976.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58124-58955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 581 24-58955 bp Feature: domain Description: Intron_maturas2 Location: 59027-59333 bp Feature: domain Description: Intron_maturas2 Location: 59027-59333 bp Feature: gene Location: 60302-61126 bp Ori: CCY00977.1 Feature: domain Description: pilus_cpaB Location: 60338-61010 bp Feature: domain Description: pilus_cpaB Location: 60338-61 01 0 bp Feature: gene Location: 61147-61977 bp Ori: CCY00978.1 Feature: domain Description: FlhG Location: 61150-61618 bp Feature: domain Description: FlhG Location: 61 1 50-61 61 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), pilus_cpaB (TIGR03177), FlhG (COG0455)

Seq: HF988333.1 Clostridium bolteae CAG:59 genomic scaffold, scf131, whole genome shotgun sequence (25242 bp)
Overview 1 RT 1: 16627-21322 bp Neighborhood of RT #1 [16627, 21333] UgpA UgpE RVT-Retrons NAT_SF YoaP spoVFB Feature: gene Location: 16627-17505 bp Ori: CCX97485.1 Feature: domain Description: UgpA Location: 16645-17491 bp Feature: domain Description: UgpA Location: 16645-17491 bp Feature: gene Location: 17520-18353 bp Ori: CCX97486.1 Feature: domain Description: UgpE Location: 17535-18348 bp Feature: domain Description: UgpE Location: 17535-18348 bp Feature: gene Location: 18761-19768 bp Ori: CCX97487.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18926-19481 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1892 6-19481 bp Feature: gene Location: 19776-20519 bp Ori: CCX97488.1 Feature: domain Description: NAT_SF Location: 19983-20100 bp Feature: domain Description: NAT_SF Location: 19983-2 0100 bp Feature: domain Description: YoaP Location: 20382-20508 bp Feature: domain Description: YoaP Location: 2 0382 -2 0508 bp Feature: gene Location: 20749-21333 bp Ori: CCX97489.1 Feature: domain Description: spoVFB Location: 20752-21322 bp Feature: domain Description: spoVFB Location: 2 0752 -2 132 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UgpA (COG1175), UgpE (COG0395), RVT-Retrons, NAT_SF (cl17182), YoaP (pfam14268), spoVFB (PRK08305)

Seq: HF988275.1 Clostridium bolteae CAG:59 genomic scaffold, scf22, whole genome shotgun sequence (115485 bp)
Overview 1 RT 1: 80493-85739 bp Neighborhood of RT #1 [80493, 85768] DDE_Tnp_1 DDE_5 RVT-GII GIIM RVT-GII MglA AraH Feature: gene Location: 80493-81161 bp Ori: CCY00456.1 Feature: domain Description: DDE_Tnp_1 Location: 80535-81003 bp Feature: domain Description: DDE_Tnp_1 Location: 8053 5-81003 bp Feature: gene Location: 81149-81781 bp Ori: CCY00457.1 Feature: domain Description: DDE_5 Location: 81305-81671 bp Feature: domain Description: DDE_5 Location: 813 05-81671 bp Feature: gene Location: 82263-82811 bp Ori: CCY00458.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82290-82443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82290-82443 bp Feature: domain Description: GIIM Note: maturase Location: 82503-82728 bp Feature: domain Description: GIIM Note: maturase Location: 82503 -82728 bp Feature: gene Location: 82808-83305 bp Ori: CCY00459.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83174-83249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 174-83 249 bp Feature: gene Location: 84073-84834 bp Ori: CCY00460.1 Feature: domain Description: MglA Location: 84085-84814 bp Feature: domain Description: MglA Location: 84085-84814 bp Feature: gene Location: 84815-85768 bp Ori: CCY00461.1 Feature: domain Description: AraH Location: 84830-85739 bp Feature: domain Description: AraH Location: 8483 0-8573 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), DDE_5 (pfam13546), RVT-GII, GIIM (pfam08388), MglA (COG1129), AraH (COG1172)