myRT

myRT report for GCA_000433575.1_MGS21

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Seq: HF997448.1 Bacteroides caccae CAG:21 genomic scaffold, scf164, whole genome shotgun sequence (91134 bp)
Overview 1 RT 1: 35726-47063 bp Neighborhood of RT #1 [35726, 47101] Laminin_G_3 CotH LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 35726-36883 bp Feature: gene Location: 36893-43681 bp Ori: CCZ72061.1 Feature: domain Description: Laminin_G_3 Location: 39329-39710 bp Feature: domain Description: Laminin_G_3 Location: 39329-3971 0 bp Feature: domain Description: CotH Location: 39974-41018 bp Feature: domain Description: CotH Location: 39974-41 01 8 bp Feature: domain Description: LRR_AMN1 Location: 41435-41903 bp Feature: domain Description: LRR_AMN1 Location: 41 435-41 903 bp Feature: gene Location: 44055-45410 bp Ori: CCZ72062.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44331-44922 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44331 -44922 bp Feature: gene Location: 45412-45906 bp Feature: gene Location: 45956-47101 bp Ori: CCZ72064.1 Feature: domain Description: Arm-DNA-bind_5 Location: 45980-46226 bp Feature: domain Description: Arm-DNA-bind_5 Location: 45980-46226 bp Feature: domain Description: Phage_int_SAM_5 Location: 46265-46550 bp Feature: domain Description: Phage_int_SAM_5 Location: 46265-46550 bp Feature: domain Description: INTN1_C_like Location: 46589-47063 bp Feature: domain Description: INTN1 _C_like Location: 46589-47063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: HF997470.1 Bacteroides caccae CAG:21 genomic scaffold, scf234, whole genome shotgun sequence (107749 bp)
Overview 1 RT 1: 55074-66003 bp Neighborhood of RT #1 [55074, 66003] Smc RVT-DGRs Feature: gene Location: 55074-55712 bp Feature: gene Location: 55709-63625 bp Ori: CCZ73068.1 Feature: domain Description: Smc Location: 56036-56321 bp Feature: domain Description: Smc Location: 56036-5632 1 bp Feature: gene Location: 63719-65209 bp Ori: CCZ73069.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64112-64709 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64112 -64709 bp Feature: gene Location: 65278-65760 bp Feature: gene Location: 65767-66003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Smc (COG1196), RVT-DGRs

Seq: HF997461.1 Bacteroides caccae CAG:21 genomic scaffold, scf196, whole genome shotgun sequence (135506 bp)
Overview 1 RT 1: 123379-135047 bp Neighborhood of RT #1 [123379, 135397] GlnA3 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 Feature: gene Location: 123379-125568 bp Ori: CCZ72643.1 Feature: domain Description: GlnA3 Location: 123451-125566 bp Feature: domain Description: GlnA3 Location: 123 451-125566 bp Feature: gene Location: 126005-128116 bp Feature: gene Location: 128319-129449 bp Ori: CCZ72645.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 128640-129192 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 128640-129192 bp Feature: gene Location: 129446-135397 bp Ori: CCZ72646.1 Feature: domain Description: DUF4011 Location: 130661-131174 bp Feature: domain Description: DUF4011 Location: 13 0661-13 1174 bp Feature: domain Description: DEXXQc_SF1 Location: 131513-132128 bp Feature: domain Description: DEXXQc_SF1 Location: 13 1513 -13 2128 bp Feature: domain Description: DEXXQc_SF1 Location: 132758-133700 bp Feature: domain Description: DEXXQc_SF1 Location: 13 2758-13 3 700 bp Feature: domain Description: TIGR00376 Location: 133829-134222 bp Feature: domain Description: TIGR003 76 Location: 13 3 829-13 4222 bp Feature: domain Description: MTES_1575 Location: 134372-134657 bp Feature: domain Description: MTES_1575 Location: 13 43 72-13 4657 bp Feature: domain Description: DUF3320 Location: 134906-135047 bp Feature: domain Description: DUF3 3 20 Location: 13 4906-13 5047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784)

Seq: HF997415.1 Bacteroides caccae CAG:21 genomic scaffold, scf75, whole genome shotgun sequence (26351 bp)
Overview 1 RT 1: 20504-25451 bp Neighborhood of RT #1 [20504, 25451] RVT-DGRs Feature: gene Location: 20504-20746 bp Feature: gene Location: 20925-21410 bp Feature: gene Location: 21407-22711 bp Ori: CCZ74292.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21623-22217 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21623-22217 bp Feature: gene Location: 23505-24272 bp Feature: gene Location: 24552-25451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs