myRT

myRT report for GCA_000434455.1_MGS5226

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Seq: FR879259.1 Prevotella sp. CAG:5226 genomic scaffold, scf799, whole genome shotgun sequence (23893 bp)
Overview 1 RT 1: 10920-14502 bp Neighborhood of RT #1 [10920, 14516] pfam00656 YfmG RVT-DGRs HRDC YfmG Feature: gene Location: 10920-11663 bp Ori: CDA42868.1 Feature: domain Description: pfam00656 Location: 10995-11607 bp Feature: domain Description: pfam00656 Location: 1 0995-1 1 607 bp Feature: gene Location: 11696-12013 bp Ori: CDA42871.1 Feature: domain Description: YfmG Location: 11711-11831 bp Feature: domain Description: YfmG Location: 1 1 71 1 -1 1 831 bp Feature: gene Location: 11991-13004 bp Ori: CDA42872.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12201-12786 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 2201 -1 2786 bp Feature: gene Location: 12961-13590 bp Ori: CDA42874.1 Feature: domain Description: HRDC Location: 13336-13519 bp Feature: domain Description: HRDC Location: 1 3336-1 351 9 bp Feature: gene Location: 13596-14516 bp Ori: CDA42876.1 Feature: domain Description: YfmG Location: 13746-14502 bp Feature: domain Description: YfmG Location: 1 3746-1 4502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pfam00656 (Peptidase_C14;Caspase domain), YfmG (COG1262), RVT-DGRs, HRDC (smart00341)

Seq: FR879333.1 Prevotella sp. CAG:5226 genomic scaffold, scf1515, whole genome shotgun sequence (55898 bp)
Overview 1 RT 1: 17177-25627 bp Neighborhood of RT #1 [17177, 25627] DUF4968 PLN02763 GH31_CPE1046 DUF5110 FN3 F5_F8_type_C Dockerin_II Type_III_cohesin_like DUF1810 RVT-AbiP2 Feature: gene Location: 17177-21085 bp Ori: CDA45422.1 Feature: domain Description: DUF4968 Location: 17384-17669 bp Feature: domain Description: DUF4968 Location: 17384-17669 bp Feature: domain Description: PLN02763 Location: 17675-17828 bp Feature: domain Description: PLN02 763 Location: 17675-1782 8 bp Feature: domain Description: GH31_CPE1046 Location: 18026-19163 bp Feature: domain Description: GH31_CPE1046 Location: 1802 6-19163 bp Feature: domain Description: DUF5110 Location: 19307-19517 bp Feature: domain Description: DUF5110 Location: 19307-19517 bp Feature: domain Description: FN3 Location: 19862-20054 bp Feature: domain Description: FN3 Location: 19862 -2 0054 bp Feature: domain Description: F5_F8_type_C Location: 20105-20444 bp Feature: domain Description: F5_F8_type_C Location: 2 0105-2 0444 bp Feature: domain Description: Dockerin_II Location: 20507-20669 bp Feature: domain Description: Dockerin_II Location: 2 0507-2 0669 bp Feature: domain Description: Type_III_cohesin_like Location: 20711-21080 bp Feature: domain Description: Type_III_cohesin_like Location: 2 0711-2 1080 bp Feature: gene Location: 21174-21593 bp Ori: CDA45424.1 Feature: domain Description: DUF1810 Location: 21183-21585 bp Feature: domain Description: DUF1810 Location: 2 1183-2 1585 bp Feature: gene Location: 21719-23437 bp Ori: CDA45425.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 22220-22676 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 2 2 2 0-2 2 676 bp Feature: gene Location: 23814-25205 bp Feature: gene Location: 25463-25627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4968 (pfam16338), PLN02763 (hydrolase, hydrolyzing O-glycosyl compounds), GH31_CPE1046 (cd06596), DUF5110 (pfam17137), FN3 (smart00060), F5_F8_type_C (pfam00754), Dockerin_II (cd14254), Type_III_cohesin_like (cd08759), DUF1810 (pfam08837), RVT-AbiP2

Seq: FR879147.1 Prevotella sp. CAG:5226 genomic scaffold, scf80, whole genome shotgun sequence (1663 bp)
Overview 1 RT 1: 207-1431 bp Neighborhood of RT #1 [207, 1613] RVT-GII GIIM Feature: gene Location: 207-1613 bp Ori: CDA43657.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 549-1167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 549-1167 bp Feature: domain Description: GIIM Note: maturase Location: 1221-1431 bp Feature: domain Description: GIIM Note: maturase Location: 1221-143 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: FR879201.1 Prevotella sp. CAG:5226 genomic scaffold, scf347, whole genome shotgun sequence (29371 bp)
Overview 1 RT 1: 10452-15330 bp Neighborhood of RT #1 [10452, 15335] WcaA ATPgrasp_TupA RVT-UG3 RVT-UG8 GT_2_WfgS_like Feature: gene Location: 10452-11243 bp Ori: CDA46059.1 Feature: domain Description: WcaA Location: 10455-11199 bp Feature: domain Description: WcaA Location: 104 55-11199 bp Feature: gene Location: 11328-11720 bp Ori: CDA46060.1 Feature: domain Description: ATPgrasp_TupA Location: 11472-11688 bp Feature: domain Description: ATPgrasp_TupA Location: 114 72-11688 bp Feature: gene Location: 11798-12976 bp Ori: CDA46061.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 12089-12548 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 12089-1254 8 bp Feature: gene Location: 12973-14004 bp Ori: CDA46062.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 13492-13927 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 134 92-13927 bp Feature: gene Location: 14059-14892 bp Feature: gene Location: 15177-15335 bp Ori: CDA46064.1 Feature: domain Description: GT_2_WfgS_like Location: 15213-15330 bp Feature: domain Description: GT_2_WfgS_like Location: 15213-15330 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WcaA (TIGR04017), ATPgrasp_TupA (pfam14305), RVT-UG3, RVT-UG8, GT_2_WfgS_like (cd06433)