myRT

myRT report for GCA_000435095.1_MGS462

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Seq: FR896569.1 Bacteroides sp. CAG:462 genomic scaffold, scf333, whole genome shotgun sequence (20965 bp)
Overview 1 RT 1: 14964-20657 bp Neighborhood of RT #1 [14964, 20839] DUF5118 DUF5117 ZnMc_MMP_like_2 DUF4953 DUF5118 DUF5117 ZnMc_MMP_like_2 DUF4953 RVT-GII GIIM Feature: gene Location: 14964-17237 bp Ori: CDD81745.1 Feature: domain Description: DUF5118 Location: 15003-15105 bp Feature: domain Description: DUF51 1 8 Location: 1 5003-1 51 05 bp Feature: domain Description: DUF5117 Location: 15156-15711 bp Feature: domain Description: DUF51 1 7 Location: 1 51 56-1 571 1 bp Feature: domain Description: ZnMc_MMP_like_2 Location: 15747-16095 bp Feature: domain Description: ZnMc_MMP_like_2 Location: 1 5747-1 6095 bp Feature: domain Description: DUF4953 Location: 16116-17004 bp Feature: domain Description: DUF4953 Location: 1 61 1 6-1 7004 bp Feature: gene Location: 17252-19321 bp Ori: CDD81746.1 Feature: domain Description: DUF5118 Location: 17360-17474 bp Feature: domain Description: DUF51 1 8 Location: 1 7360-1 7474 bp Feature: domain Description: DUF5117 Location: 17522-18047 bp Feature: domain Description: DUF51 1 7 Location: 1 7522-1 8047 bp Feature: domain Description: ZnMc_MMP_like_2 Location: 18095-18434 bp Feature: domain Description: ZnMc_MMP_like_2 Location: 1 8095-1 8434 bp Feature: domain Description: DUF4953 Location: 18698-19100 bp Feature: domain Description: DUF4953 Location: 1 8698-1 91 00 bp Feature: gene Location: 19433-20839 bp Ori: CDD81747.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19775-20393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9775-20393 bp Feature: domain Description: GIIM Note: maturase Location: 20447-20657 bp Feature: domain Description: GIIM Note: maturase Location: 20447-20657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5118 (pfam17162), DUF5117 (pfam17148), ZnMc_MMP_like_2 (cd04276), DUF4953 (pfam16313), RVT-GII, GIIM (pfam08388)

Seq: FR896541.1 Bacteroides sp. CAG:462 genomic scaffold, scf260, whole genome shotgun sequence (16268 bp)
Overview 1 RT 1: 136-4780 bp Neighborhood of RT #1 [136, 4926] RVT-GII Intron_maturas2 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like TfoX Feature: gene Location: 136-507 bp Feature: gene Location: 504-725 bp Feature: gene Location: 709-2517 bp Ori: CDD84258.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 973-1795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 973-1795 bp Feature: domain Description: Intron_maturas2 Location: 1906-2176 bp Feature: domain Description: Intron_maturas2 Location: 1906-2 176 bp Feature: gene Location: 3064-4224 bp Ori: CDD84259.1 Feature: domain Description: Arm-DNA-bind_5 Location: 3112-3349 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3112 -3349 bp Feature: domain Description: Phage_int_SAM_5 Location: 3421-3703 bp Feature: domain Description: Phage_int_SAM_5 Location: 342 1-3703 bp Feature: domain Description: INTN1_C_like Location: 3745-4207 bp Feature: domain Description: INTN1_C_like Location: 3745-42 07 bp Feature: gene Location: 4606-4926 bp Ori: CDD84260.1 Feature: domain Description: TfoX Location: 4609-4780 bp Feature: domain Description: TfoX Location: 4609-4780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), TfoX (COG3070)

Seq: FR896560.1 Bacteroides sp. CAG:462 genomic scaffold, scf304, whole genome shotgun sequence (29424 bp)
Overview 1 RT 1: 19971-29193 bp Neighborhood of RT #1 [19971, 29204] YitT leuS RVT-GII RVT-GII GIIM ARS_like PRK13745 Feature: gene Location: 19971-20876 bp Ori: CDD81491.1 Feature: domain Description: YitT Location: 20004-20862 bp Feature: domain Description: YitT Location: 20004-20862 bp Feature: gene Location: 20942-23779 bp Ori: CDD81492.1 Feature: domain Description: leuS Location: 20945-23774 bp Feature: domain Description: leuS Location: 20945-23 774 bp Feature: gene Location: 24870-25688 bp Ori: CDD81493.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25212-25653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25212-25653 bp Feature: gene Location: 25685-26275 bp Ori: CDD81494.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25688-25829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25688-25829 bp Feature: domain Description: GIIM Note: maturase Location: 25886-26114 bp Feature: domain Description: GIIM Note: maturase Location: 25886-26114 bp Feature: gene Location: 26449-27852 bp Ori: CDD81495.1 Feature: domain Description: ARS_like Location: 26542-27781 bp Feature: domain Description: ARS_like Location: 26542-27781 bp Feature: gene Location: 27972-29204 bp Ori: CDD81496.1 Feature: domain Description: PRK13745 Location: 27975-29193 bp Feature: domain Description: PRK13 745 Location: 27975-29193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YitT (COG1284), leuS (PRK12300), RVT-GII, GIIM (pfam08388), ARS_like (cd16146), PRK13745 (anaerobic sulfatase-maturation protein)

Seq: FR896609.1 Bacteroides sp. CAG:462 genomic scaffold, scf574, whole genome shotgun sequence (56849 bp)
Overview 1 RT 1: 12743-20687 bp Neighborhood of RT #1 [12743, 20692] HxlR RVT-GII GIIM SusD OMP_RagA_SusC Feature: gene Location: 12743-13117 bp Ori: CDD82588.1 Feature: domain Description: HxlR Location: 12770-13103 bp Feature: domain Description: HxlR Location: 12770-13103 bp Feature: gene Location: 13196-13438 bp Feature: gene Location: 13449-14855 bp Ori: CDD82590.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13791-14409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13791-14 4 09 bp Feature: domain Description: GIIM Note: maturase Location: 14463-14667 bp Feature: domain Description: GIIM Note: maturase Location: 14 4 63-14 667 bp Feature: gene Location: 15360-17342 bp Ori: CDD82591.1 Feature: domain Description: SusD Location: 15567-16803 bp Feature: domain Description: SusD Location: 15567-16803 bp Feature: gene Location: 17357-20692 bp Ori: CDD82592.1 Feature: domain Description: OMP_RagA_SusC Location: 17540-20687 bp Feature: domain Description: OMP_RagA_SusC Location: 1754 0-20687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HxlR (pfam01638), RVT-GII, GIIM (pfam08388), SusD (NF033071), OMP_RagA_SusC (TIGR04056)