myRT

myRT report for GCA_000435835.1_MGS221

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Seq: FR883366.1 Clostridium sp. CAG:221 genomic scaffold, scf11, whole genome shotgun sequence (118965 bp)
Overview 1 RT 1: 21764-29057 bp Neighborhood of RT #1 [21764, 29062] HIRAN Dck RVT-GII HNHc Dck nadE Feature: gene Location: 21764-23692 bp Ori: CDB15050.1 Feature: domain Description: HIRAN Location: 23393-23618 bp Feature: domain Description: HIRAN Location: 23393-2361 8 bp Feature: gene Location: 23771-24064 bp Ori: CDB15051.1 Feature: domain Description: Dck Location: 23774-24047 bp Feature: domain Description: Dck Location: 23774-24047 bp Feature: gene Location: 24811-26646 bp Ori: CDB15052.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25123-25846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251 23-25846 bp Feature: domain Description: HNHc Note: nucleases Location: 26392-26536 bp Feature: domain Description: HNHc Note: nucleases Location: 26392-26536 bp Feature: gene Location: 26719-27141 bp Ori: CDB15053.1 Feature: domain Description: Dck Location: 26752-27121 bp Feature: domain Description: Dck Location: 26752-271 21 bp Feature: gene Location: 27158-29062 bp Ori: CDB15054.1 Feature: domain Description: nadE Location: 27164-29057 bp Feature: domain Description: nadE Location: 271 64-29057 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HIRAN (smart00910), Dck (COG1428), RVT-GII, HNHc (smart00507), nadE (TIGR00552)

Seq: FR883429.1 Clostridium sp. CAG:221 genomic scaffold, scf170, whole genome shotgun sequence (175908 bp)
Overview 1 RT 1: 14951-18842 bp 2 RT 2: 102727-117090 bp Neighborhood of RT #1 [14951, 18886] PRK09263 group_II_RT_mat RVT-GII PRK09263 ACD_LpsHSP_like Neighborhood of RT #2 [102727, 117101] CwlO1 Spr recJ RVT-GII HNHc recJ GATase1_DJ-1 PRK13979 parE_Gpos RVT-GII HNHc GyrB Feature: gene Location: 14951-15667 bp Ori: CDB14736.1 Feature: domain Description: PRK09263 Location: 14990-15656 bp Feature: domain Description: PRK092 63 Location: 14990-15656 bp Feature: gene Location: 15760-15921 bp Feature: gene Location: 15911-16912 bp Ori: CDB14738.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 15920-16085 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1592 0-16085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16127-16337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1612 7-16337 bp Feature: gene Location: 17604-18131 bp Ori: CDB14739.1 Feature: domain Description: PRK09263 Location: 17607-18108 bp Feature: domain Description: PRK092 63 Location: 17607-18108 bp Feature: gene Location: 18458-18886 bp Ori: CDB14740.1 Feature: domain Description: ACD_LpsHSP_like Location: 18572-18842 bp Feature: domain Description: ACD_LpsHSP_like Location: 18572 -18842 bp Feature: gene Location: 102727-103974 bp Ori: CDB14821.1 Feature: domain Description: CwlO1 Location: 102736-103375 bp Feature: domain Description: CwlO1 Location: 102 736-103375 bp Feature: domain Description: Spr Location: 103534-103969 bp Feature: domain Description: Spr Location: 103534-103969 bp Feature: gene Location: 104134-105678 bp Ori: CDB14822.1 Feature: domain Description: recJ Location: 104173-105664 bp Feature: domain Description: recJ Location: 104173-105664 bp Feature: gene Location: 105769-107643 bp Ori: CDB14823.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106087-106825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106087-10682 5 bp Feature: domain Description: HNHc Note: nucleases Location: 107389-107527 bp Feature: domain Description: HNHc Note: nucleases Location: 107389-10752 7 bp Feature: gene Location: 108405-108680 bp Ori: CDB14824.1 Feature: domain Description: recJ Location: 108474-108663 bp Feature: domain Description: recJ Location: 108474-108663 bp Feature: gene Location: 108793-109329 bp Ori: CDB14825.1 Feature: domain Description: GATase1_DJ-1 Location: 108802-109279 bp Feature: domain Description: GATase1_DJ-1 Location: 108802 -1092 79 bp Feature: gene Location: 109458-112352 bp Ori: CDB14826.1 Feature: domain Description: PRK13979 Location: 109467-112341 bp Feature: domain Description: PRK13979 Location: 109467-112 341 bp Feature: gene Location: 112376-112789 bp Ori: CDB14827.1 Feature: domain Description: parE_Gpos Location: 112415-112781 bp Feature: domain Description: parE_Gpos Location: 112 415-112 781 bp Feature: gene Location: 112843-114753 bp Ori: CDB14828.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113167-113905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113167-113905 bp Feature: domain Description: HNHc Note: nucleases Location: 114487-114622 bp Feature: domain Description: HNHc Note: nucleases Location: 114487-11462 2 bp Feature: gene Location: 115072-115275 bp Feature: gene Location: 115521-117101 bp Ori: CDB14830.1 Feature: domain Description: GyrB Location: 115533-117090 bp Feature: domain Description: GyrB Location: 115533-117090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09263 (anaerobic ribonucleoside triphosphate reductase; Provisional), group_II_RT_mat (TIGR04416), RVT-GII, ACD_LpsHSP_like (cd06471), CwlO1 (COG3883), Spr (COG0791), recJ (TIGR00644), HNHc (smart00507), GATase1_DJ-1 (cd03135), PRK13979 (DNA topoisomerase IV subunit A; Provisional)
parE_Gpos (TIGR01058), GyrB (COG0187)

Seq: FR883427.1 Clostridium sp. CAG:221 genomic scaffold, scf115, whole genome shotgun sequence (131518 bp)
Overview 1 RT 1: 14259-20121 bp 2 RT 2: 90506-97956 bp Neighborhood of RT #1 [14259, 20129] CyaB H3TH_53EXO RVT-GII HNHc PIN_53EXO NA37 Neighborhood of RT #2 [90506, 97961] PRK07111 LAGLIDADG_3 LAGLIDADG_3 RVT-GII HNHc PRK07111 PRK07111 aksA Feature: gene Location: 14259-14816 bp Ori: CDB14454.1 Feature: domain Description: CyaB Location: 14262-14784 bp Feature: domain Description: CyaB Location: 14262-14784 bp Feature: gene Location: 14834-15514 bp Ori: CDB14455.1 Feature: domain Description: H3TH_53EXO Location: 14936-15401 bp Feature: domain Description: H3 TH_53 EXO Location: 1493 6-15401 bp Feature: gene Location: 15725-17578 bp Ori: CDB14456.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16037-16757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1603 7-16757 bp Feature: domain Description: HNHc Note: nucleases Location: 17312-17450 bp Feature: domain Description: HNHc Note: nucleases Location: 173 12-17450 bp Feature: gene Location: 18299-18796 bp Ori: CDB14457.1 Feature: domain Description: PIN_53EXO Location: 18320-18779 bp Feature: domain Description: PIN_53 EXO Location: 183 20-18779 bp Feature: gene Location: 19089-20129 bp Ori: CDB14458.1 Feature: domain Description: NA37 Location: 19128-20121 bp Feature: domain Description: NA3 7 Location: 19128-20121 bp Feature: gene Location: 90506-91003 bp Ori: CDB14529.1 Feature: domain Description: PRK07111 Location: 90512-90983 bp Feature: domain Description: PRK07111 Location: 90512-90983 bp Feature: gene Location: 91295-92104 bp Ori: CDB14530.1 Feature: domain Description: LAGLIDADG_3 Location: 91517-91712 bp Feature: domain Description: LAGLIDADG_3 Location: 91517-91712 bp Feature: domain Description: LAGLIDADG_3 Location: 91817-91871 bp Feature: domain Description: LAGLIDADG_3 Location: 91817-91871 bp Feature: gene Location: 93030-94880 bp Ori: CDB14531.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93369-94068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 3 69-94068 bp Feature: domain Description: HNHc Note: nucleases Location: 94623-94761 bp Feature: domain Description: HNHc Note: nucleases Location: 94623 -94761 bp Feature: gene Location: 95053-96534 bp Ori: CDB14532.1 Feature: domain Description: PRK07111 Location: 95056-95137 bp Feature: domain Description: PRK07111 Location: 95056-9513 7 bp Feature: domain Description: PRK07111 Location: 95143-96499 bp Feature: domain Description: PRK07111 Location: 95143 -96499 bp Feature: gene Location: 96798-97961 bp Ori: CDB14533.1 Feature: domain Description: aksA Location: 96825-97956 bp Feature: domain Description: aksA Location: 96825-97956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CyaB (COG1437), H3TH_53EXO (cd09898), RVT-GII, HNHc (smart00507), PIN_53EXO (cd09859), NA37 (pfam04245), PRK07111 (anaerobic ribonucleoside triphosphate reductase; Provisional), LAGLIDADG_3 (pfam14528), aksA (PRK11858)