myRT

myRT report for GCA_000436935.1_MGS227

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Seq: FR891774.1 Firmicutes bacterium CAG:227 genomic scaffold, scf213, whole genome shotgun sequence (3415 bp)
Overview 1 RT 1: 21-2907 bp Neighborhood of RT #1 [21, 3068] GGDEF RVT-GII GIIM Feature: gene Location: 21-278 bp Feature: gene Location: 306-1421 bp Ori: CDC91327.1 Feature: domain Description: GGDEF Location: 927-1389 bp Feature: domain Description: GGDEF Location: 927-1 389 bp Feature: gene Location: 1656-3068 bp Ori: CDC91328.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2007-2628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2007-2628 bp Feature: domain Description: GIIM Note: maturase Location: 2679-2907 bp Feature: domain Description: GIIM Note: maturase Location: 2679-2907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GGDEF (TIGR00254), RVT-GII, GIIM (pfam08388)

Seq: FR891835.1 Firmicutes bacterium CAG:227 genomic scaffold, scf374, whole genome shotgun sequence (50031 bp)
Overview 1 RT 1: 15688-21872 bp Neighborhood of RT #1 [15688, 21877] Cas6 Cas2_I_II_III RVT-CRISPR RVT-UNC cas1_HMARI AlkD_like YjjU Feature: gene Location: 15688-16413 bp Ori: CDC93228.1 Feature: domain Description: Cas6 Location: 15691-16405 bp Feature: domain Description: Cas6 Location: 15691-16405 bp Feature: gene Location: 17140-17400 bp Ori: CDC93229.1 Feature: domain Description: Cas2_I_II_III Location: 17149-17374 bp Feature: domain Description: Cas2 _I_II_III Location: 17149-17374 bp Feature: gene Location: 17410-18036 bp Ori: CDC93230.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 17620-18034 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1762 0-18034 bp Feature: gene Location: 18037-19314 bp Ori: CDC93231.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 18043-18196 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 18043-18196 bp Feature: domain Description: cas1_HMARI Location: 18337-19306 bp Feature: domain Description: cas1_HMARI Location: 18337-19306 bp Feature: gene Location: 20149-20823 bp Ori: CDC93232.1 Feature: domain Description: AlkD_like Location: 20194-20761 bp Feature: domain Description: AlkD_like Location: 2 0194-2 0761 bp Feature: gene Location: 21017-21877 bp Ori: CDC93233.1 Feature: domain Description: YjjU Location: 21032-21872 bp Feature: domain Description: YjjU Location: 2 1032 -2 1872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas6 (pfam09559), Cas2_I_II_III (cl11442), RVT-CRISPR, RVT-UG7/RVT-CRISPR/RVT-GII/RVT-Retrons(RVT-UNC), cas1_HMARI (TIGR03641), AlkD_like (cl11434), YjjU (COG4667)