myRT

myRT report for GCA_000437115.1_MGS470

Download annotations/find similar RTs

Seq: FR898125.1 Clostridium sp. CAG:470 genomic scaffold, scf27, whole genome shotgun sequence (83103 bp)
Overview 1 RT 1: 20151-22582 bp Neighborhood of RT #1 [20151, 22582] RVT-Retrons Feature: gene Location: 20151-20747 bp Feature: gene Location: 20984-21229 bp Feature: gene Location: 21340-22011 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21349-21769 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 349-21 769 bp Feature: gene Location: 22055-22291 bp Feature: gene Location: 22352-22582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: FR898105.1 Clostridium sp. CAG:470 genomic scaffold, scf15, whole genome shotgun sequence (7417 bp)
Overview 1 RT 1: 5187-6831 bp Neighborhood of RT #1 [5187, 7046] MutS_I Avd_like RVT-DGRs Feature: gene Location: 5187-5615 bp Feature: domain Description: MutS_I Location: 5202-5397 bp Feature: domain Description: MutS_I Location: 52 02 -5397 bp Feature: gene Location: 5602-5961 bp Feature: domain Description: Avd_like Location: 5632-5950 bp Feature: domain Description: Avd_like Location: 5632 -5950 bp Feature: gene Location: 5946-7046 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6153-6831 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6153-6831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MutS_I (pfam01624), Avd_like (cd16376), RVT-DGRs

Seq: FR898146.1 Clostridium sp. CAG:470 genomic scaffold, scf89, whole genome shotgun sequence (5876 bp)
Overview 1 RT 1: 365-5646 bp Neighborhood of RT #1 [365, 5801] TraC-F-type RVT-GII HNHc TraC-F-type VirB4_CagE Feature: gene Location: 365-1252 bp Feature: domain Description: TraC-F-type Location: 422-1130 bp Feature: domain Description: TraC-F-type Location: 422-113 0 bp Feature: gene Location: 1443-3263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1740-2436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1740-243 6 bp Feature: domain Description: HNHc Note: nucleases Location: 3042-3147 bp Feature: domain Description: HNHc Note: nucleases Location: 3 042-3 147 bp Feature: gene Location: 3984-4664 bp Feature: domain Description: TraC-F-type Location: 4104-4620 bp Feature: domain Description: TraC-F-type Location: 4104-4620 bp Feature: gene Location: 5163-5801 bp Feature: domain Description: VirB4_CagE Location: 5247-5646 bp Feature: domain Description: VirB4_CagE Location: 5247-5646 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), TraC-F-type (TIGR02746), VirB4_CagE (TIGR00929)

Seq: FR898157.1 Clostridium sp. CAG:470 genomic scaffold, scf73, whole genome shotgun sequence (106918 bp)
Overview 1 RT 1: 38279-42250 bp Neighborhood of RT #1 [38279, 42711] RVT-DGRs RVT-DGRs DUF3751 DUF2313 Feature: gene Location: 38279-38392 bp Feature: gene Location: 38385-38717 bp Feature: gene Location: 38686-39114 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38689-38917 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38689-38917 bp Feature: gene Location: 39080-39742 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 39293-39638 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 39293-39638 bp Feature: gene Location: 40116-41921 bp Feature: domain Description: DUF3751 Location: 40137-40569 bp Feature: domain Description: DUF3751 Location: 4 0137-4 0569 bp Feature: gene Location: 41923-42711 bp Feature: domain Description: DUF2313 Location: 41932-42250 bp Feature: domain Description: DUF2313 Location: 4 1932-4 2250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF3751 (pfam12571), DUF2313 (pfam10076)