myRT

myRT report for GCA_000437375.1_MGS841

Download annotations/find similar RTs

Seq: FR898222.1 Eubacterium sp. CAG:841 genomic scaffold, scf73, whole genome shotgun sequence (28980 bp)
Overview 1 RT 1: 1584-8894 bp Neighborhood of RT #1 [1584, 10210] Collagen Collagen Collagen Collagen AcrR RVT_N RVT-GII GIIM HNHc DUF3852 Flg_new Flg_new Flg_new Flg_new Flg_new Flg_new Flg_new Feature: gene Location: 1584-2978 bp Feature: domain Description: Collagen Location: 1779-1935 bp Feature: domain Description: Collagen Location: 1 779-1 935 bp Feature: domain Description: Collagen Location: 2028-2064 bp Feature: domain Description: Collagen Location: 2028-2064 bp Feature: domain Description: Collagen Location: 2163-2337 bp Feature: domain Description: Collagen Location: 21 63-2337 bp Feature: domain Description: Collagen Location: 2406-2532 bp Feature: domain Description: Collagen Location: 2406-2532 bp Feature: gene Location: 2975-3580 bp Feature: domain Description: AcrR Location: 3026-3209 bp Feature: domain Description: AcrR Location: 3026-3209 bp Feature: gene Location: 4083-5996 bp Feature: RT Description: RVT_N Location: 4221-4353 bp Feature: RT Description: RVT_N Location: 4221 -4353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4443-5169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4443-51 69 bp Feature: domain Description: GIIM Note: maturase Location: 5283-5463 bp Feature: domain Description: GIIM Note: maturase Location: 5283-5463 bp Feature: domain Description: HNHc Note: nucleases Location: 5751-5886 bp Feature: domain Description: HNHc Note: nucleases Location: 5751 -5886 bp Feature: gene Location: 6698-6976 bp Feature: domain Description: DUF3852 Location: 6710-6965 bp Feature: domain Description: DUF3852 Location: 671 0-6965 bp Feature: gene Location: 6998-10210 bp Feature: domain Description: Flg_new Location: 7019-7136 bp Feature: domain Description: Flg_new Location: 701 9-71 36 bp Feature: domain Description: Flg_new Location: 7163-7367 bp Feature: domain Description: Flg_new Location: 71 63-7367 bp Feature: domain Description: Flg_new Location: 7769-7976 bp Feature: domain Description: Flg_new Location: 7769-7976 bp Feature: domain Description: Flg_new Location: 8000-8207 bp Feature: domain Description: Flg_new Location: 8000-8207 bp Feature: domain Description: Flg_new Location: 8231-8438 bp Feature: domain Description: Flg_new Location: 8231 -8438 bp Feature: domain Description: Flg_new Location: 8462-8669 bp Feature: domain Description: Flg_new Location: 8462-8669 bp Feature: domain Description: Flg_new Location: 8687-8894 bp Feature: domain Description: Flg_new Location: 8687-8894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Collagen (pfam01391), AcrR (COG1309), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF3852 (pfam12963), Flg_new (pfam09479)

Seq: FR898238.1 Eubacterium sp. CAG:841 genomic scaffold, scf119, whole genome shotgun sequence (111371 bp)
Overview 1 RT 1: 107445-110852 bp Neighborhood of RT #1 [107445, 110852] MmcQ HipB RVT-Retrons Feature: gene Location: 107445-107843 bp Feature: domain Description: MmcQ Location: 107448-107811 bp Feature: domain Description: MmcQ Location: 107448-107811 bp Feature: gene Location: 108093-109283 bp Feature: domain Description: HipB Location: 108108-108459 bp Feature: domain Description: HipB Location: 108108-108459 bp Feature: gene Location: 109612-110592 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 109750-110362 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 109750-110362 bp Feature: gene Location: 110625-110852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MmcQ (COG2315), HipB (COG1396), RVT-Retrons