myRT

myRT report for GCA_000439125.1_ASM43912v1

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Seq: KE392231.1 Blautia producta ATCC 27340 = DSM 2950 genomic scaffold G480DRAFT_scaffold00001.1, whole genome shotgun sequence (605572 bp)
Overview 1 RT 1: 160-2925 bp 2 RT 2: 218040-226886 bp 3 RT 3: 485769-490502 bp Neighborhood of RT #1 [160, 2925] RVT-GII Intron_maturas2 Neighborhood of RT #2 [218040, 226993] TrbL TrbL Maff2 RVT-GII HNHc Maff2 TraG-D_C RVT-GII Intron_maturas2 VirD4 VirD4 DUF3801 Neighborhood of RT #3 [485769, 490528] YfcE RVT-Retrons F420_ligase Feature: gene Location: 160-1989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 436-1270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 436-1 270 bp Feature: domain Description: Intron_maturas2 Location: 1354-1696 bp Feature: domain Description: Intron_maturas2 Location: 1 354-1 696 bp Feature: gene Location: 2256-2510 bp Feature: gene Location: 2521-2925 bp Feature: gene Location: 218040-218903 bp Feature: domain Description: TrbL Location: 218064-218280 bp Feature: domain Description: TrbL Location: 21 8064-21 8280 bp Feature: domain Description: TrbL Location: 218337-218859 bp Feature: domain Description: TrbL Location: 21 8337-21 8859 bp Feature: gene Location: 218910-219098 bp Feature: domain Description: Maff2 Location: 219003-219093 bp Feature: domain Description: Maff2 Location: 21 9003-21 9093 bp Feature: gene Location: 219163-221037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219490-220228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 9490-220228 bp Feature: domain Description: HNHc Note: nucleases Location: 220771-220924 bp Feature: domain Description: HNHc Note: nucleases Location: 220771 -220924 bp Feature: gene Location: 221086-221304 bp Feature: gene Location: 221745-221876 bp Feature: domain Description: Maff2 Location: 221748-221874 bp Feature: domain Description: Maff2 Location: 221 748-221 874 bp Feature: gene Location: 222115-222561 bp Feature: domain Description: TraG-D_C Location: 222163-222340 bp Feature: domain Description: TraG-D_C Location: 2221 63-222340 bp Feature: gene Location: 222637-224457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222910-223738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22291 0-223738 bp Feature: domain Description: Intron_maturas2 Location: 223819-224119 bp Feature: domain Description: Intron_maturas2 Location: 22381 9-2241 1 9 bp Feature: gene Location: 225051-226520 bp Feature: domain Description: VirD4 Location: 225279-225594 bp Feature: domain Description: VirD4 Location: 225279-225594 bp Feature: domain Description: VirD4 Location: 225693-226491 bp Feature: domain Description: VirD4 Location: 225693-226491 bp Feature: gene Location: 226517-226993 bp Feature: domain Description: DUF3801 Location: 226607-226886 bp Feature: domain Description: DUF3801 Location: 226607-226886 bp Feature: gene Location: 485769-486251 bp Feature: domain Description: YfcE Location: 485772-486216 bp Feature: domain Description: YfcE Location: 485772-48621 6 bp Feature: gene Location: 487393-487686 bp Feature: gene Location: 487922-488941 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 488087-488642 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 488087-488642 bp Feature: gene Location: 489015-489170 bp Feature: gene Location: 489281-490528 bp Feature: domain Description: F420_ligase Location: 489359-490502 bp Feature: domain Description: F420_ligase Location: 489359-490502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), TrbL (pfam04610), Maff2 (pfam12750), HNHc (smart00507), TraG-D_C (pfam12696), VirD4 (COG3505), DUF3801 (pfam12687), YfcE (COG0622), RVT-Retrons
F420_ligase (pfam01996)

Seq: AUUC01000003.1 Blautia producta ATCC 27340 = DSM 2950 G480DRAFT_scaffold00002.2_C, whole genome shotgun sequence (410301 bp)
Overview 1 RT 1: 1-5179 bp Neighborhood of RT #1 [1, 5226] RVT-GII GIIM RVT-GII GIIM LolD MacB_PCD SalY SalY Feature: gene Location: 1-204 bp Feature: gene Location: 547-1791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 751-1408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 751-1408 bp Feature: domain Description: GIIM Note: maturase Location: 1489-1705 bp Feature: domain Description: GIIM Note: maturase Location: 1489-1705 bp Feature: gene Location: 1871-2497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1877-2015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1877-2 015 bp Feature: domain Description: GIIM Note: maturase Location: 2066-2282 bp Feature: domain Description: GIIM Note: maturase Location: 2 066-2 2 82 bp Feature: gene Location: 2597-2842 bp Feature: domain Description: LolD Location: 2654-2828 bp Feature: domain Description: LolD Location: 2 654-2 82 8 bp Feature: gene Location: 2839-5226 bp Feature: domain Description: MacB_PCD Location: 2920-3400 bp Feature: domain Description: MacB_PCD Location: 2 92 0-3400 bp Feature: domain Description: SalY Location: 3436-3958 bp Feature: domain Description: SalY Location: 3436-3958 bp Feature: domain Description: SalY Location: 4570-5179 bp Feature: domain Description: SalY Location: 4570-5179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LolD (COG1136), MacB_PCD (pfam12704), SalY (COG0577)

Seq: AUUC01000028.1 Blautia producta ATCC 27340 = DSM 2950 G480DRAFT_scaffold00023.23_C, whole genome shotgun sequence (93791 bp)
Overview 1 RT 1: 90905-93339 bp Neighborhood of RT #1 [90905, 93632] T4SS-DNA_transf RVT-GII Intron_maturas2 Feature: gene Location: 90905-91273 bp Feature: gene Location: 91282-91569 bp Feature: domain Description: T4SS-DNA_transf Location: 91288-91399 bp Feature: domain Description: T4SS-DNA_transf Location: 91288-913 99 bp Feature: gene Location: 91803-93632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92079-92913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92079-92913 bp Feature: domain Description: Intron_maturas2 Location: 92997-93339 bp Feature: domain Description: Intron_maturas2 Location: 92997-93 3 3 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), RVT-GII, Intron_maturas2 (pfam01348)

Seq: AUUC01000029.1 Blautia producta ATCC 27340 = DSM 2950 G480DRAFT_scaffold00024.24_C, whole genome shotgun sequence (79735 bp)
Overview 1 RT 1: 1-3834 bp 2 RT 2: 58184-60989 bp Neighborhood of RT #1 [1, 3848] RVT-GII GIIM galactose_mutarotase_like Neighborhood of RT #2 [58184, 60989] Avd_like RVT-DGRs Feature: gene Location: 1-204 bp Feature: gene Location: 547-1791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 751-1408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 751-14 08 bp Feature: domain Description: GIIM Note: maturase Location: 1489-1705 bp Feature: domain Description: GIIM Note: maturase Location: 14 89-1705 bp Feature: gene Location: 1916-2398 bp Feature: gene Location: 2763-3848 bp Feature: domain Description: galactose_mutarotase_like Location: 2844-3834 bp Feature: domain Description: galactose_mutarotase_like Location: 284 4 -3834 bp Feature: gene Location: 58184-58633 bp Feature: domain Description: Avd_like Location: 58250-58556 bp Feature: domain Description: Avd_like Location: 58250-58556 bp Feature: gene Location: 58664-58993 bp Feature: gene Location: 59007-60170 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 59211-59943 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 59211-5994 3 bp Feature: gene Location: 60293-60622 bp Feature: gene Location: 60750-60989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), galactose_mutarotase_like (cd09019), Avd_like (cd16376), RVT-DGRs

Seq: AUUC01000052.1 Blautia producta ATCC 27340 = DSM 2950 G480DRAFT_scaffold00044.44_C, whole genome shotgun sequence (17243 bp)
Overview 1 RT 1: 80-2727 bp 2 RT 2: 14896-17212 bp Neighborhood of RT #1 [80, 2765] RVT-GII GIIM RVT-GII Tra5 Neighborhood of RT #2 [14896, 17241] OmpR RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 80-1324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284-941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284-941 bp Feature: domain Description: GIIM Note: maturase Location: 1022-1238 bp Feature: domain Description: GIIM Note: maturase Location: 1022-1238 bp Feature: gene Location: 1839-2249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1851-2220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 185 1-2220 bp Feature: gene Location: 2262-2441 bp Feature: gene Location: 2460-2765 bp Feature: domain Description: Tra5 Location: 2469-2727 bp Feature: domain Description: Tra5 Location: 2469-2727 bp Feature: gene Location: 14896-15348 bp Feature: domain Description: OmpR Location: 14908-15106 bp Feature: domain Description: OmpR Location: 14908-15 106 bp Feature: gene Location: 15617-16099 bp Feature: gene Location: 16207-16893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16477-16870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16477-16870 bp Feature: gene Location: 16972-17241 bp Feature: domain Description: DDE_Tnp_IS66 Location: 16978-17071 bp Feature: domain Description: DDE_Tnp_IS66 Location: 16978-17071 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 17089-17212 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 17089-17212 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801), OmpR (COG0745), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)