myRT

myRT report for GCA_000439225.1_AtWRT31V1.0

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Seq: CM002025.1 Agrobacterium tumefaciens WRT31 chromosome 2, whole genome shotgun sequence (2176692 bp)
Overview 1 RT 1: 1779440-1785900 bp Neighborhood of RT #1 [1779440, 1785900] PIN_VapC4-5_FitB-like RVT-Retrons TIGR03491 KOG1803 DNA2 Feature: gene Location: 1779440-1779622 bp Feature: gene Location: 1779991-1780803 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 1780291-1780693 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 1 780291 -1 780693 bp Feature: gene Location: 1780953-1782698 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1781145-1781703 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 781 1 45-1 781 703 bp Feature: gene Location: 1782908-1785379 bp Feature: domain Description: TIGR03491 Location: 1782932-1783493 bp Feature: domain Description: TIGR03491 Location: 1 782932-1 783493 bp Feature: domain Description: KOG1803 Location: 1784192-1784384 bp Feature: domain Description: KOG1 803 Location: 1 7841 92-1 784384 bp Feature: domain Description: DNA2 Location: 1784564-1785293 bp Feature: domain Description: DNA2 Location: 1 784564-1 785293 bp Feature: gene Location: 1785493-1785900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_VapC4-5_FitB-like (cd18754), RVT-Retrons, TIGR03491 (RecB family nuclease, putative, TM0106 family), KOG1803 (KOG1803, DNA helicase ), DNA2 (COG1112)

Seq: APLP01000009.1 Agrobacterium tumefaciens WRT31 WRT31_contig9, whole genome shotgun sequence (674326 bp)
Overview 1 RT 1: 62916-66256 bp Neighborhood of RT #1 [62916, 66256] IstB_IS21 PHA02517 RVT-GII GIIM Feature: gene Location: 62916-63716 bp Feature: domain Description: IstB_IS21 Location: 63090-63615 bp Feature: domain Description: IstB_IS2 1 Location: 63090-63615 bp Feature: gene Location: 63796-64152 bp Feature: domain Description: PHA02517 Location: 63799-64141 bp Feature: domain Description: PHA02 517 Location: 63799-64141 bp Feature: gene Location: 64331-65857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64604-65336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64604-65336 bp Feature: domain Description: GIIM Note: maturase Location: 65408-65636 bp Feature: domain Description: GIIM Note: maturase Location: 65408-65636 bp Feature: gene Location: 65877-66020 bp Feature: gene Location: 66041-66256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IstB_IS21 (pfam01695), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: APLP01000010.1 Agrobacterium tumefaciens WRT31 WRT31_contig10, whole genome shotgun sequence (89649 bp)
Overview 1 RT 1: 68934-71461 bp Neighborhood of RT #1 [68934, 71461] HTH_XRE RVT-Retrons OBF_DNA_ligase_LigD Feature: gene Location: 68934-69287 bp Feature: gene Location: 69325-69648 bp Feature: domain Description: HTH_XRE Location: 69361-69523 bp Feature: domain Description: HTH_XRE Location: 693 61-69523 bp Feature: gene Location: 69638-70678 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 69818-70325 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 69818-703 25 bp Feature: gene Location: 70745-70921 bp Feature: domain Description: OBF_DNA_ligase_LigD Location: 70775-70901 bp Feature: domain Description: OBF_DNA_ligase_LigD Location: 70775-70901 bp Feature: gene Location: 71219-71461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, OBF_DNA_ligase_LigD (cd07971)