myRT

myRT report for GCA_000439515.1_ASM43951v1

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Seq: CP004849.1 Alteromonas mediterranea U4 strain Ionian Sea U4 chromosome, complete genome (4321296 bp)
Overview 1 RT 1: 638391-646936 bp Neighborhood of RT #1 [638391, 646959] PEP_TPR_lipo RVT_N RVT-GII GIIM HNHc LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C PRK15483 Feature: gene Location: 638391-640703 bp Feature: domain Description: PEP_TPR_lipo Location: 638472-640647 bp Feature: domain Description: PEP_TPR_lipo Location: 638472-640647 bp Feature: gene Location: 640844-641773 bp Feature: gene Location: 641948-643519 bp Feature: RT Description: RVT_N Location: 641951-642134 bp Feature: RT Description: RVT_N Location: 641 951 -6421 34 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 642179-642836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6421 79-642836 bp Feature: domain Description: GIIM Note: maturase Location: 642896-643121 bp Feature: domain Description: GIIM Note: maturase Location: 642896-6431 21 bp Feature: domain Description: HNHc Note: nucleases Location: 643322-643469 bp Feature: domain Description: HNHc Note: nucleases Location: 643322-643469 bp Feature: gene Location: 643824-645323 bp Feature: domain Description: LZ_Tnp_IS66 Location: 643905-644100 bp Feature: domain Description: LZ_Tnp_IS66 Location: 643905-6441 00 bp Feature: domain Description: zf-IS66 Location: 644127-644256 bp Feature: domain Description: zf-IS66 Location: 6441 27-644256 bp Feature: domain Description: DDE_Tnp_IS66 Location: 644316-645177 bp Feature: domain Description: DDE_Tnp_IS66 Location: 64431 6-6451 77 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 645198-645306 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6451 98-645306 bp Feature: gene Location: 645382-646959 bp Feature: domain Description: PRK15483 Location: 645397-646936 bp Feature: domain Description: PRK1 5483 Location: 645397-646936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PEP_TPR_lipo (TIGR02917), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PRK15483 (type III restriction-modification system endonuclease)