myRT

myRT report for GCA_000439815.2_ASM43981v2

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Seq: AOSX01000021.1 Clostridium botulinum Af84 plasmid pCLQ, complete sequence, whole genome shotgun sequence (246124 bp)
Overview 1 RT 1: 39205-46114 bp Neighborhood of RT #1 [39205, 46173] ssb RVT-GII GIIM HNHc beta_clamp InsQ Feature: gene Location: 39205-39894 bp Feature: gene Location: 40050-40697 bp Ori: EPS54273.1 Feature: domain Description: ssb Location: 40068-40632 bp Feature: domain Description: ssb Location: 40068-40632 bp Feature: gene Location: 41406-43268 bp Ori: EPS54274.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41718-42450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 71 8-42450 bp Feature: domain Description: GIIM Note: maturase Location: 42516-42723 bp Feature: domain Description: GIIM Note: maturase Location: 4251 6-42723 bp Feature: domain Description: HNHc Note: nucleases Location: 42990-43140 bp Feature: domain Description: HNHc Note: nucleases Location: 42990-431 40 bp Feature: gene Location: 43462-44607 bp Ori: EPS54275.1 Feature: domain Description: beta_clamp Location: 43465-44593 bp Feature: domain Description: beta_clamp Location: 43465-44593 bp Feature: gene Location: 44929-46173 bp Ori: EPS54276.1 Feature: domain Description: InsQ Location: 44941-46114 bp Feature: domain Description: InsQ Location: 44941 -461 1 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ssb (TIGR00621), RVT-GII, GIIM (pfam08388), HNHc (smart00507), beta_clamp (cl29549), InsQ (COG0675)

Seq: AOSX01000018.1 Clostridium botulinum Af84 Contig_18, whole genome shotgun sequence (2040448 bp)
Overview 1 RT 1: 920847-924394 bp 2 RT 2: 1453854-1458824 bp Neighborhood of RT #1 [920847, 924394] AcrR Beta-lactamase RVT-GII PBP2_LTTR_substrate Neighborhood of RT #2 [1453854, 1458868] PcnB RVT_N RVT_N RVT-GII GIIM McrA GIY-YIG_LuxR_like Feature: gene Location: 920847-921455 bp Ori: EPS55398.1 Feature: domain Description: AcrR Location: 920862-921273 bp Feature: domain Description: AcrR Location: 92 0862 -92 12 73 bp Feature: gene Location: 921917-923014 bp Ori: EPS55399.1 Feature: domain Description: Beta-lactamase Location: 921959-922958 bp Feature: domain Description: Beta-lactamase Location: 92 1959-92 2 958 bp Feature: gene Location: 923646-923864 bp Ori: EPS55400.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 923652-923787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 3652 -92 3787 bp Feature: gene Location: 924002-924199 bp Ori: EPS55401.1 Feature: domain Description: PBP2_LTTR_substrate Location: 924008-924179 bp Feature: domain Description: PBP2 _LTTR_substrate Location: 92 4008-92 4179 bp Feature: gene Location: 924227-924394 bp Feature: gene Location: 1453854-1455206 bp Ori: EPS55882.1 Feature: domain Description: PcnB Location: 1453893-1455156 bp Feature: domain Description: PcnB Location: 1453893-1455156 bp Feature: gene Location: 1455677-1456015 bp Ori: EPS55883.1 Feature: domain Description: RVT_N Location: 1455896-1455995 bp Feature: domain Description: RVT_N Location: 1455896-1455995 bp Feature: gene Location: 1456008-1457660 bp Ori: EPS55884.1 Feature: domain Description: RVT_N Location: 1456011-1456137 bp Feature: domain Description: RVT_N Location: 1456011-1456137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1456197-1456848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1456197-1456848 bp Feature: domain Description: GIIM Note: maturase Location: 1456911-1457145 bp Feature: domain Description: GIIM Note: maturase Location: 1456911-1457145 bp Feature: domain Description: McrA Location: 1457244-1457559 bp Feature: domain Description: McrA Location: 14572 44-1457559 bp Feature: gene Location: 1457956-1458438 bp Feature: gene Location: 1458509-1458868 bp Ori: EPS55886.1 Feature: domain Description: GIY-YIG_LuxR_like Location: 1458530-1458824 bp Feature: domain Description: GIY-YIG_LuxR_like Location: 1458530-145882 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), Beta-lactamase (pfam00144), RVT-GII, PBP2_LTTR_substrate (cd05466), PcnB (COG0617), RVT_N (pfam13655), GIIM (pfam08388), McrA (COG4058), GIY-YIG_LuxR_like (cd10451)