myRT

myRT report for GCA_000440895.1_version1

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Seq: ALLX01000005.1 Streptococcus suis 88-5299A Contig00005, whole genome shotgun sequence (33483 bp)
Overview 1 RT 1: 30375-33222 bp Neighborhood of RT #1 [30375, 33296] NTP-PPase_u6 thrS RVT-Retrons Feature: gene Location: 30375-30704 bp Feature: domain Description: NTP-PPase_u6 Location: 30414-30675 bp Feature: domain Description: NTP-PPase_u6 Location: 3041 4-30675 bp Feature: gene Location: 30722-32674 bp Feature: domain Description: thrS Location: 30725-32651 bp Feature: domain Description: thrS Location: 30725-32651 bp Feature: gene Location: 33006-33296 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33129-33222 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 331 29-33222 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP-PPase_u6 (cd11543), thrS (TIGR00418), RVT-Retrons

Seq: ALLX01000062.1 Streptococcus suis 88-5299A Contig00063, whole genome shotgun sequence (18085 bp)
Overview 1 RT 1: 4460-13591 bp Neighborhood of RT #1 [4460, 13635] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc SF2_C_SNF Omega_Repress Feature: gene Location: 4460-5011 bp Feature: gene Location: 5048-10525 bp Feature: domain Description: N6_Mtase Location: 7073-7664 bp Feature: domain Description: N6_Mtase Location: 7073-7664 bp Feature: domain Description: COG4646 Location: 8255-10382 bp Feature: domain Description: COG4646 Location: 82 55-10382 bp Feature: gene Location: 11023-12801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11284-12076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 84-12 076 bp Feature: domain Description: Intron_maturas2 Location: 12181-12412 bp Feature: domain Description: Intron_maturas2 Location: 12 181-12 412 bp Feature: domain Description: HNHc Note: nucleases Location: 12577-12763 bp Feature: domain Description: HNHc Note: nucleases Location: 12 577-12 763 bp Feature: gene Location: 12939-13382 bp Feature: domain Description: SF2_C_SNF Location: 13182-13329 bp Feature: domain Description: SF2 _C_SNF Location: 13182 -1332 9 bp Feature: gene Location: 13465-13635 bp Feature: domain Description: Omega_Repress Location: 13468-13591 bp Feature: domain Description: Omega_Repress Location: 13468-13591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SF2_C_SNF (cd18793), Omega_Repress (pfam07764), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: ALLX01000092.1 Streptococcus suis 88-5299A Contig00096, whole genome shotgun sequence (3408 bp)
Overview 1 RT 1: 727-3334 bp Neighborhood of RT #1 [727, 3405] RVT-GII cas_Csn1 AbiEii Feature: gene Location: 727-2649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1789 bp Feature: domain Description: cas_Csn1 Location: 2200-2479 bp Feature: domain Description: cas_Csn1 Location: 2200-2479 bp Feature: gene Location: 2998-3405 bp Feature: domain Description: AbiEii Location: 3016-3334 bp Feature: domain Description: AbiEii Location: 3 016-3 3 3 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), RVT-GII, cas_Csn1 (TIGR01865)