myRT

myRT report for GCA_000444135.1_CLC6_0_3

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Seq: ATDK01000020.1 Pseudomonas avellanae BPIC 631 contig20, whole genome shotgun sequence (2064 bp)
Overview 1 RT 1: 84-2007 bp Neighborhood of RT #1 [84, 2036] RVT-G2L4 SLATT_5 Feature: gene Location: 84-1331 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 297-888 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 297-888 bp Feature: gene Location: 1401-2036 bp Feature: domain Description: SLATT_5 Location: 1404-2007 bp Feature: domain Description: SLATT_5 Location: 1 404-2007 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-G2L4, SLATT_5 (pfam18160)

Seq: ATDK01000233.1 Pseudomonas avellanae BPIC 631 contig233, whole genome shotgun sequence (41549 bp)
Overview 1 RT 1: 37969-40708 bp Neighborhood of RT #1 [37969, 41262] T6SS_HCP RVT-UG17 Feature: gene Location: 37969-38613 bp Feature: gene Location: 38961-39455 bp Feature: domain Description: T6SS_HCP Location: 38979-39372 bp Feature: domain Description: T6SS_HCP Location: 38979-39372 bp Feature: gene Location: 39826-41262 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 40096-40708 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 40096-40708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T6SS_HCP (pfam05638), RVT-UG17

Seq: ATDK01000292.1 Pseudomonas avellanae BPIC 631 contig292, whole genome shotgun sequence (30209 bp)
Overview 1 RT 1: 17572-24655 bp Neighborhood of RT #1 [17572, 24657] FimA RVT-GII GIIM autotrans_barl Feature: gene Location: 17572-18693 bp Feature: domain Description: FimA Location: 18205-18691 bp Feature: domain Description: FimA Location: 18205-18691 bp Feature: gene Location: 18731-20236 bp Feature: gene Location: 20436-21692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20628-21243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20628-21243 bp Feature: domain Description: GIIM Note: maturase Location: 21300-21525 bp Feature: domain Description: GIIM Note: maturase Location: 213 00-21525 bp Feature: gene Location: 21697-22308 bp Feature: gene Location: 22333-24657 bp Feature: domain Description: autotrans_barl Location: 23440-24655 bp Feature: domain Description: autotrans_barl Location: 23 440-24655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimA (pfam16970), RVT-GII, GIIM (pfam08388), autotrans_barl (TIGR01414)

Seq: ATDK01000476.1 Pseudomonas avellanae BPIC 631 contig476, whole genome shotgun sequence (1880 bp)
Overview 1 RT 1: 85-1879 bp Neighborhood of RT #1 [85, 1879] RVT-GII GIIM Feature: gene Location: 85-1371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-94 3 bp Feature: domain Description: GIIM Note: maturase Location: 988-1198 bp Feature: domain Description: GIIM Note: maturase Location: 988-1198 bp Feature: gene Location: 1595-1879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)