myRT

myRT report for GCA_000445165.1_UNSWDHB

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Seq: AUUR01000173.1 Dehalobacter sp. UNSWDHB Contig_173, whole genome shotgun sequence (57322 bp)
Overview 1 RT 1: 27038-32118 bp Neighborhood of RT #1 [27038, 32118] ChiA1_BD ChiA1_BD RVT-DGRs Feature: gene Location: 27038-27541 bp Feature: domain Description: ChiA1_BD Location: 27221-27347 bp Feature: domain Description: ChiA1 _BD Location: 27221 -27347 bp Feature: domain Description: ChiA1_BD Location: 27425-27521 bp Feature: domain Description: ChiA1 _BD Location: 27425-27521 bp Feature: gene Location: 27538-29268 bp Feature: gene Location: 29225-29944 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 29237-29735 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 29237-29735 bp Feature: gene Location: 30845-31129 bp Feature: gene Location: 31228-32118 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ChiA1_BD (cd12214), RVT-DGRs

Seq: AUUR01000176.1 Dehalobacter sp. UNSWDHB Contig_176, whole genome shotgun sequence (4107 bp)
Overview 1 RT 1: 136-3819 bp Neighborhood of RT #1 [136, 3819] DDE_5 pfam03781 RVT-GII GIIM Feature: gene Location: 136-1578 bp Feature: domain Description: DDE_5 Location: 331-967 bp Feature: domain Description: DDE_5 Location: 331-967 bp Feature: gene Location: 1658-2074 bp Feature: domain Description: pfam03781 Location: 1688-2063 bp Feature: domain Description: pfam03781 Location: 1688-2 063 bp Feature: gene Location: 2302-3648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2608-3277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 608-32 77 bp Feature: domain Description: GIIM Note: maturase Location: 3355-3589 bp Feature: domain Description: GIIM Note: maturase Location: 3355-3589 bp Feature: gene Location: 3706-3819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), RVT-GII, GIIM (pfam08388)

Seq: AUUR01000162.1 Dehalobacter sp. UNSWDHB Contig_162, whole genome shotgun sequence (15809 bp)
Overview 1 RT 1: 13485-15648 bp Neighborhood of RT #1 [13485, 15707] RVT-GII GIIM Feature: gene Location: 13485-13697 bp Feature: gene Location: 14190-14303 bp Feature: gene Location: 14361-15707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14667-15336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14667-153 3 6 bp Feature: domain Description: GIIM Note: maturase Location: 15414-15648 bp Feature: domain Description: GIIM Note: maturase Location: 15414-15648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AUUR01000020.1 Dehalobacter sp. UNSWDHB Contig_20, whole genome shotgun sequence (3782 bp)
Overview 1 RT 1: 296-2635 bp Neighborhood of RT #1 [296, 3366] RVT-GII GIIM AlbA_2 Feature: gene Location: 296-1657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 602-1292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 602-1292 bp Feature: domain Description: GIIM Note: maturase Location: 1385-1577 bp Feature: domain Description: GIIM Note: maturase Location: 1385-1577 bp Feature: gene Location: 1685-1912 bp Feature: gene Location: 2182-3366 bp Feature: domain Description: AlbA_2 Location: 2257-2635 bp Feature: domain Description: AlbA_2 Location: 2257-2635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlbA_2 (pfam04326), RVT-GII, GIIM (pfam08388)

Seq: AUUR01000114.1 Dehalobacter sp. UNSWDHB Contig_114, whole genome shotgun sequence (8421 bp)
Overview 1 RT 1: 49-3532 bp Neighborhood of RT #1 [49, 3540] RVT-GII GIIM COG3462 LCB5 Feature: gene Location: 49-204 bp Feature: gene Location: 398-1786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 719-1334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 719-1334 bp Feature: domain Description: GIIM Note: maturase Location: 1388-1598 bp Feature: domain Description: GIIM Note: maturase Location: 1388-15 98 bp Feature: gene Location: 1908-2174 bp Feature: domain Description: COG3462 Location: 1920-2169 bp Feature: domain Description: COG3462 Location: 1920-2169 bp Feature: gene Location: 2596-3540 bp Feature: domain Description: LCB5 Location: 2617-3532 bp Feature: domain Description: LCB5 Location: 2617-35 32 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3462 (Uncharacterized membrane protein ), LCB5 (COG1597), RVT-GII, GIIM (pfam08388)

Seq: AUUR01000010.1 Dehalobacter sp. UNSWDHB Contig_10, whole genome shotgun sequence (26779 bp)
Overview 1 RT 1: 6150-18240 bp Neighborhood of RT #1 [6150, 18240] cbiD RVT-GII RVT_N RVT-GII Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like xerS INT_RitA_C_like RVT-GII GIIM HNHc Feature: gene Location: 6150-7277 bp Feature: domain Description: cbiD Location: 6165-7224 bp Feature: domain Description: cbiD Location: 6 16 5-7224 bp Feature: gene Location: 7456-7590 bp Feature: gene Location: 8410-10221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8719-9421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8719-9421 bp Feature: gene Location: 10885-11619 bp Feature: RT Description: RVT_N Location: 10933-11176 bp Feature: RT Description: RVT_N Location: 10933-11176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11233-11611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11233-116 11 bp Feature: gene Location: 11721-12734 bp Feature: domain Description: Phage_int_SAM_1 Location: 11769-12018 bp Feature: domain Description: Phage_int_SAM_1 Location: 1176 9-12018 bp Feature: domain Description: INT_RitC_C_like Location: 12099-12651 bp Feature: domain Description: INT_RitC_C_like Location: 12099-126 51 bp Feature: gene Location: 12721-13707 bp Feature: domain Description: INT_RitB_C_like Location: 13057-13642 bp Feature: domain Description: INT_RitB_C_like Location: 13057-136 42 bp Feature: gene Location: 13700-14935 bp Feature: domain Description: xerS Location: 14060-14177 bp Feature: domain Description: xerS Location: 1406 0-14177 bp Feature: domain Description: INT_RitA_C_like Location: 14369-14903 bp Feature: domain Description: INT_RitA_C_like Location: 1436 9-14903 bp Feature: gene Location: 15129-16130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15165-15366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1516 5-1536 6 bp Feature: domain Description: GIIM Note: maturase Location: 15429-15663 bp Feature: domain Description: GIIM Note: maturase Location: 15429-156 6 3 bp Feature: domain Description: HNHc Note: nucleases Location: 15864-16035 bp Feature: domain Description: HNHc Note: nucleases Location: 1586 4-16 035 bp Feature: gene Location: 16535-17428 bp Feature: gene Location: 17554-18240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), cbiD (TIGR00312), INT_RitB_C_like (cd00797), xerS (PRK05084), INT_RitA_C_like (cd01188), GIIM (pfam08388), HNHc (smart00507)

Seq: AUUR01000075.1 Dehalobacter sp. UNSWDHB Contig_75, whole genome shotgun sequence (15871 bp)
Overview 1 RT 1: 11715-15508 bp Neighborhood of RT #1 [11715, 15558] QueG RVT-GII GIIM Feature: gene Location: 11715-12743 bp Feature: domain Description: QueG Location: 11730-12726 bp Feature: domain Description: QueG Location: 117 30-127 26 bp Feature: gene Location: 13499-13648 bp Feature: gene Location: 14269-15558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14569-15202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14569-15202 bp Feature: domain Description: GIIM Note: maturase Location: 15289-15508 bp Feature: domain Description: GIIM Note: maturase Location: 15289-15508 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT QueG (COG1600), RVT-GII, GIIM (pfam08388)

Seq: AUUR01000093.1 Dehalobacter sp. UNSWDHB Contig_93, whole genome shotgun sequence (20713 bp)
Overview 1 RT 1: 119-4133 bp Neighborhood of RT #1 [119, 4133] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 119-1948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383-1220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38 3-1220 bp Feature: domain Description: Intron_maturas2 Location: 1292-1622 bp Feature: domain Description: Intron_maturas2 Location: 1292-1622 bp Feature: domain Description: HNHc Note: nucleases Location: 1769-1919 bp Feature: domain Description: HNHc Note: nucleases Location: 1769-1919 bp Feature: gene Location: 1945-2073 bp Feature: gene Location: 2571-4133 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: AUUR01000092.1 Dehalobacter sp. UNSWDHB Contig_92, whole genome shotgun sequence (49180 bp)
Overview 1 RT 1: 513-3613 bp Neighborhood of RT #1 [513, 3613] RVT-GII Intron_maturas2 HNHc DUF3852 Feature: gene Location: 513-641 bp Feature: gene Location: 638-2467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 902-1739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9 02-1739 bp Feature: domain Description: Intron_maturas2 Location: 1811-2141 bp Feature: domain Description: Intron_maturas2 Location: 1811-2141 bp Feature: domain Description: HNHc Note: nucleases Location: 2288-2438 bp Feature: domain Description: HNHc Note: nucleases Location: 2288-2438 bp Feature: gene Location: 2811-3149 bp Feature: domain Description: DUF3852 Location: 2817-3141 bp Feature: domain Description: DUF3852 Location: 2817-3141 bp Feature: gene Location: 3161-3613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3852 (pfam12963), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: AUUR01000117.1 Dehalobacter sp. UNSWDHB Contig_117, whole genome shotgun sequence (69173 bp)
Overview 1 RT 1: 59160-64093 bp Neighborhood of RT #1 [59160, 64104] CsoR-like_DUF156_1 RVT-GII GIIM atpC atpD Feature: gene Location: 59160-59792 bp Feature: gene Location: 60002-60304 bp Feature: domain Description: CsoR-like_DUF156_1 Location: 60059-60299 bp Feature: domain Description: CsoR-like_DUF156_1 Location: 60059-60299 bp Feature: gene Location: 60427-61836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60781-61399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60781-61399 bp Feature: domain Description: GIIM Note: maturase Location: 61450-61681 bp Feature: domain Description: GIIM Note: maturase Location: 61450-61681 bp Feature: gene Location: 62297-62698 bp Feature: domain Description: atpC Location: 62300-62693 bp Feature: domain Description: atpC Location: 62300-62693 bp Feature: gene Location: 62701-64104 bp Feature: domain Description: atpD Location: 62713-64093 bp Feature: domain Description: atpD Location: 62713-64093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CsoR-like_DUF156_1 (cd10158), RVT-GII, GIIM (pfam08388), atpC (PRK14736), atpD (TIGR01039)

Seq: AUUR01000116.1 Dehalobacter sp. UNSWDHB Contig_116, whole genome shotgun sequence (6786 bp)
Overview 1 RT 1: 103-2394 bp Neighborhood of RT #1 [103, 2504] RVT-GII GIIM VOC_like Feature: gene Location: 103-1449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1078 bp Feature: domain Description: GIIM Note: maturase Location: 1156-1390 bp Feature: domain Description: GIIM Note: maturase Location: 11 56-1390 bp Feature: gene Location: 1507-1620 bp Feature: gene Location: 2034-2504 bp Feature: domain Description: VOC_like Location: 2037-2394 bp Feature: domain Description: VOC_like Location: 2037-2394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), VOC_like (cd16355)