myRT

myRT report for GCA_000447295.1_ASM44729v1

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Seq: KE650771.1 Fischerella sp. PCC 9431 genomic scaffold Fis9431DRAFT_Scaffold1.2, whole genome shotgun sequence (6735698 bp)
Overview 1 RT 1: 4514814-4521459 bp 2 RT 2: 6077198-6082926 bp 3 RT 3: 6501901-6511177 bp 4 RT 4: 6531480-6534526 bp 5 RT 5: 6676744-6681242 bp 6 RT 6: 6689758-6696289 bp Neighborhood of RT #1 [4514814, 4521473] ABC_cobalt_CbiO_domain1 AarF RVT-DGRs Avd_like YfmG Neighborhood of RT #2 [6077198, 6082943] DUF5615 Phd RVT-UG7 alaS HMA Neighborhood of RT #3 [6501901, 6511185] RVT_N RVT-GII RVT_N RVT-GII RVT-GII GIIM RVT-GII GIIM HNH DnaB Neighborhood of RT #4 [6531480, 6534552] RVT-DGRs Avd_like YfmG Neighborhood of RT #5 [6676744, 6681274] AcrA RVT-GII GIIM HNH RVT_N RVT-GII HNH Neighborhood of RT #6 [6689758, 6696369] HTH_XRE NB-ARC WD40 WD40 WD40 WD40 RVT-GII GIIM InsA Feature: gene Location: 4514814-4515533 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 4514835-4515450 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 451 4835-451 5450 bp Feature: gene Location: 4515590-4517302 bp Feature: domain Description: AarF Location: 4515629-4517123 bp Feature: domain Description: AarF Location: 451 5629-451 71 23 bp Feature: gene Location: 4518346-4519404 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4518553-4519198 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 451 8553-451 91 98 bp Feature: gene Location: 4519401-4519748 bp Feature: domain Description: Avd_like Location: 4519419-4519725 bp Feature: domain Description: Avd_like Location: 451 941 9-451 9725 bp Feature: gene Location: 4519917-4521473 bp Feature: domain Description: YfmG Location: 4520643-4521459 bp Feature: domain Description: YfmG Location: 4520643-4521 459 bp Feature: gene Location: 6077198-6077581 bp Feature: domain Description: DUF5615 Location: 6077207-6077438 bp Feature: domain Description: DUF561 5 Location: 6077207-6077438 bp Feature: gene Location: 6077677-6077889 bp Feature: domain Description: Phd Location: 6077680-6077887 bp Feature: domain Description: Phd Location: 6077680-6077887 bp Feature: gene Location: 6078080-6079624 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 6078458-6078881 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 6078458-6078881 bp Feature: gene Location: 6079782-6082427 bp Feature: domain Description: alaS Location: 6079812-6082410 bp Feature: domain Description: alaS Location: 607981 2-608241 0 bp Feature: gene Location: 6082740-6082943 bp Feature: domain Description: HMA Location: 6082755-6082926 bp Feature: domain Description: HMA Location: 6082755-6082926 bp Feature: gene Location: 6501901-6502134 bp Feature: gene Location: 6502869-6503030 bp Feature: gene Location: 6503372-6503944 bp Feature: domain Description: RVT_N Location: 6503432-6503678 bp Feature: domain Description: RVT_N Location: 6503432-6503678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6503726-6503864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6503726-6503864 bp Feature: gene Location: 6504483-6505340 bp Feature: domain Description: RVT_N Location: 6504519-6504765 bp Feature: domain Description: RVT_N Location: 650451 9-6504765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6504807-6505323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6504807-6505323 bp Feature: gene Location: 6505472-6505729 bp Feature: gene Location: 6505821-6507131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6506118-6506745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65061 1 8-6506745 bp Feature: domain Description: GIIM Note: maturase Location: 6506823-6507030 bp Feature: domain Description: GIIM Note: maturase Location: 6506823-6507030 bp Feature: gene Location: 6507277-6508209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6507346-6507499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6507346-6507499 bp Feature: domain Description: GIIM Note: maturase Location: 6507556-6507784 bp Feature: domain Description: GIIM Note: maturase Location: 6507556-6507784 bp Feature: domain Description: HNH Note: nucleases Location: 6508036-6508174 bp Feature: domain Description: HNH Note: nucleases Location: 6508036-65081 74 bp Feature: gene Location: 6509108-6509845 bp Feature: gene Location: 6509842-6511185 bp Feature: domain Description: DnaB Location: 6509857-6511177 bp Feature: domain Description: DnaB Location: 6509857-651 1 1 77 bp Feature: gene Location: 6531480-6531686 bp Feature: gene Location: 6531693-6532154 bp Feature: gene Location: 6532093-6533151 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6532297-6532945 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6532297-6532945 bp Feature: gene Location: 6533158-6533514 bp Feature: domain Description: Avd_like Location: 6533176-6533482 bp Feature: domain Description: Avd_like Location: 65331 76-6533482 bp Feature: gene Location: 6533704-6534552 bp Feature: domain Description: YfmG Location: 6533740-6534526 bp Feature: domain Description: YfmG Location: 6533740-6534526 bp Feature: gene Location: 6676744-6678435 bp Feature: domain Description: AcrA Location: 6676783-6678085 bp Feature: domain Description: AcrA Location: 6676783-6678085 bp Feature: gene Location: 6678452-6678703 bp Feature: gene Location: 6678705-6679808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6678711-6679092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 667871 1 -6679092 bp Feature: domain Description: GIIM Note: maturase Location: 6679143-6679377 bp Feature: domain Description: GIIM Note: maturase Location: 66791 43-6679377 bp Feature: domain Description: HNH Note: nucleases Location: 6679629-6679767 bp Feature: domain Description: HNH Note: nucleases Location: 6679629-6679767 bp Feature: gene Location: 6679841-6680425 bp Feature: domain Description: RVT_N Location: 6679919-6680162 bp Feature: domain Description: RVT_N Location: 667991 9-66801 62 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6680207-6680345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6680207-6680345 bp Feature: gene Location: 6680670-6680888 bp Feature: gene Location: 6681068-6681274 bp Feature: domain Description: HNH Note: nucleases Location: 6681107-6681242 bp Feature: domain Description: HNH Note: nucleases Location: 6681 1 07-6681 242 bp Feature: gene Location: 6689758-6693414 bp Feature: domain Description: HTH_XRE Location: 6689875-6689998 bp Feature: domain Description: HTH_XRE Location: 6689875-6689998 bp Feature: domain Description: NB-ARC Location: 6690181-6690766 bp Feature: domain Description: NB-ARC Location: 66901 81 -6690766 bp Feature: domain Description: WD40 Location: 6691561-6692386 bp Feature: domain Description: WD40 Location: 6691 561 -6692386 bp Feature: domain Description: WD40 Location: 6692398-6692515 bp Feature: domain Description: WD40 Location: 6692398-669251 5 bp Feature: domain Description: WD40 Location: 6692530-6692638 bp Feature: domain Description: WD40 Location: 6692530-6692638 bp Feature: domain Description: WD40 Location: 6692743-6693304 bp Feature: domain Description: WD40 Location: 6692743-6693304 bp Feature: gene Location: 6693975-6694232 bp Feature: gene Location: 6694324-6695634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6694621-6695248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6694621 -6695248 bp Feature: domain Description: GIIM Note: maturase Location: 6695326-6695533 bp Feature: domain Description: GIIM Note: maturase Location: 6695326-6695533 bp Feature: gene Location: 6695780-6695962 bp Feature: gene Location: 6696010-6696369 bp Feature: domain Description: InsA Location: 6696013-6696289 bp Feature: domain Description: InsA Location: 669601 3-6696289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_cobalt_CbiO_domain1 (cd03225), AarF (COG0661), RVT-DGRs, Avd_like (cd16376), YfmG (COG1262), DUF5615 (pfam18480), Phd (COG4118), RVT-UG7, alaS (TIGR00344), HMA (pfam00403)
RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), DnaB (TIGR00665), AcrA (COG0845), HTH_XRE (smart00530), NB-ARC (pfam00931), WD40 (smart00320), InsA (COG3677)

Seq: ALVX01000004.1 Fischerella sp. PCC 9431 Fis9431DRAFT_Scaffold2.6_C1, whole genome shotgun sequence (182124 bp)
Overview 1 RT 1: 78448-82077 bp Neighborhood of RT #1 [78448, 82130] Cas1_I-II-III RVT-CRISPR DUF4174 InsQ Feature: gene Location: 78448-78624 bp Feature: gene Location: 78822-79826 bp Feature: domain Description: Cas1_I-II-III Location: 78834-79791 bp Feature: domain Description: Cas1_I-II-III Location: 78834-79791 bp Feature: gene Location: 79952-80914 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 80159-80765 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 80159-80765 bp Feature: gene Location: 81039-81602 bp Feature: domain Description: DUF4174 Location: 81234-81579 bp Feature: domain Description: DUF4174 Location: 812 34-81579 bp Feature: gene Location: 81915-82130 bp Feature: domain Description: InsQ Location: 81981-82077 bp Feature: domain Description: InsQ Location: 81981-82 077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas1_I-II-III (cl00656), RVT-CRISPR, DUF4174 (pfam13778), InsQ (COG0675)

Seq: ALVX01000007.1 Fischerella sp. PCC 9431 Fis9431DRAFT_Scaffold3.4_C1, whole genome shotgun sequence (85321 bp)
Overview 1 RT 1: 34455-38570 bp Neighborhood of RT #1 [34455, 38593] RVT-DGRs Avd_like COG4249 YfmG Feature: gene Location: 34455-34661 bp Feature: gene Location: 34740-35141 bp Feature: gene Location: 35080-36138 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35284-35932 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 5284-3 593 2 bp Feature: gene Location: 36145-36501 bp Feature: domain Description: Avd_like Location: 36163-36469 bp Feature: domain Description: Avd_like Location: 3 6163 -3 6469 bp Feature: gene Location: 36692-38593 bp Feature: domain Description: COG4249 Location: 36695-37568 bp Feature: domain Description: COG4249 Location: 3 6695-3 7568 bp Feature: domain Description: YfmG Location: 37709-38570 bp Feature: domain Description: YfmG Location: 3 7709-3 8570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), COG4249 (Uncharacterized protein, contains caspase domain ), YfmG (COG1262)