myRT

myRT report for GCA_000447415.1_PhoTem1.0

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Seq: AUXQ01000123.1 Photorhabdus temperata subsp. temperata M1021 Contig123, whole genome shotgun sequence (4259 bp)
Overview 1 RT 1: 194-737 bp Neighborhood of RT #1 [194, 772] RVT-GII Feature: gene Location: 194-772 bp Ori: EQB98114.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 554-737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 554-737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AUXQ01000124.1 Photorhabdus temperata subsp. temperata M1021 Contig124, whole genome shotgun sequence (10950 bp)
Overview 1 RT 1: 226-1197 bp Neighborhood of RT #1 [226, 1202] RVT-GII group_II_RT_mat HTH_43 Feature: gene Location: 226-717 bp Ori: EQB98096.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 235-712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 35-712 bp Feature: gene Location: 719-898 bp Ori: EQB98097.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 743-875 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 743-875 bp Feature: gene Location: 963-1202 bp Ori: EQB98098.1 Feature: domain Description: HTH_43 Location: 978-1197 bp Feature: domain Description: HTH_43 Location: 978-1197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), HTH_43 (pfam09904)

Seq: AUXQ01000155.1 Photorhabdus temperata subsp. temperata M1021 Contig155, whole genome shotgun sequence (4054 bp)
Overview 1 RT 1: 106-4054 bp Neighborhood of RT #1 [106, 4054] RVT-GII Metallophos Feature: gene Location: 106-1320 bp Ori: EQB97926.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-958 bp Feature: gene Location: 2250-3077 bp Ori: EQB97927.1 Feature: domain Description: Metallophos Location: 2340-2991 bp Feature: domain Description: Metallophos Location: 23 40-2991 bp Feature: gene Location: 3842-4054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Metallophos (pfam00149)

Seq: AUXQ01000019.1 Photorhabdus temperata subsp. temperata M1021 Contig019, whole genome shotgun sequence (43100 bp)
Overview 1 RT 1: 19-2288 bp 2 RT 2: 38004-41709 bp Neighborhood of RT #1 [19, 2290] RVT-GII group_II_RT_mat PRK09010 Neighborhood of RT #2 [38004, 41709] DDE_Tnp_Tn3 RVT-GII GIIM Feature: gene Location: 19-390 bp Feature: gene Location: 395-928 bp Ori: EQC00792.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 13-911 bp Feature: gene Location: 965-1213 bp Ori: EQC00793.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 1097-1184 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1097-1184 bp Feature: gene Location: 1775-2290 bp Ori: EQC00794.1 Feature: domain Description: PRK09010 Location: 1778-2288 bp Feature: domain Description: PRK09010 Location: 1778-2288 bp Feature: gene Location: 38004-38855 bp Ori: EQC00823.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 38010-38790 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 38010-38790 bp Feature: gene Location: 39104-39439 bp Feature: gene Location: 39436-40698 bp Ori: EQC00825.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39640-40297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3964 0-4 0297 bp Feature: domain Description: GIIM Note: maturase Location: 40378-40579 bp Feature: domain Description: GIIM Note: maturase Location: 4 0378-4 0579 bp Feature: gene Location: 40723-40962 bp Feature: gene Location: 41278-41709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), PRK09010 (single-stranded DNA-binding protein; Provisional), DDE_Tnp_Tn3 (pfam01526), GIIM (pfam08388)

Seq: AUXQ01000158.1 Photorhabdus temperata subsp. temperata M1021 Contig158, whole genome shotgun sequence (1615 bp)
Overview 1 RT 1: 230-1615 bp Neighborhood of RT #1 [230, 1615] RVT-GII GIIM Feature: gene Location: 230-826 bp Ori: EQB97918.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245-386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245 -386 bp Feature: domain Description: GIIM Note: maturase Location: 437-647 bp Feature: domain Description: GIIM Note: maturase Location: 437-647 bp Feature: gene Location: 823-1615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AUXQ01000298.1 Photorhabdus temperata subsp. temperata M1021 Contig298, whole genome shotgun sequence (3761 bp)
Overview 1 RT 1: 616-1963 bp Neighborhood of RT #1 [616, 2340] RVT-GII Feature: gene Location: 616-804 bp Feature: gene Location: 909-1199 bp Feature: gene Location: 1264-2340 bp Ori: EQB97651.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1270-1963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1270-196 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AUXQ01000011.1 Photorhabdus temperata subsp. temperata M1021 Contig011, whole genome shotgun sequence (158174 bp)
Overview 1 RT 1: 1-6760 bp Neighborhood of RT #1 [1, 6762] DDE_Tnp_Tn3 RVT-GII PRK10534 hemN Feature: gene Location: 1-2394 bp Ori: EQC01394.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 1045-2203 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1045-2203 bp Feature: gene Location: 2438-3217 bp Ori: EQC01395.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2441-2840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2441-2840 bp Feature: gene Location: 3955-5013 bp Ori: EQC01396.1 Feature: domain Description: PRK10534 Location: 3958-4957 bp Feature: domain Description: PRK10534 Location: 3958-4957 bp Feature: gene Location: 5389-6762 bp Ori: EQC01397.1 Feature: domain Description: hemN Location: 5413-6760 bp Feature: domain Description: hemN Location: 5413-67 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), RVT-GII, PRK10534 (L-threonine aldolase; Provisional), hemN (TIGR00538)

Seq: AUXQ01000241.1 Photorhabdus temperata subsp. temperata M1021 Contig241, whole genome shotgun sequence (4072 bp)
Overview 1 RT 1: 1645-3901 bp Neighborhood of RT #1 [1645, 3942] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1645-1911 bp Feature: gene Location: 2152-3942 bp Ori: EQB97742.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2413-3205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2413-3205 bp Feature: domain Description: Intron_maturas2 Location: 3307-3538 bp Feature: domain Description: Intron_maturas2 Location: 3307-3538 bp Feature: domain Description: HNHc Note: nucleases Location: 3709-3901 bp Feature: domain Description: HNHc Note: nucleases Location: 3709-3901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: AUXQ01000050.1 Photorhabdus temperata subsp. temperata M1021 Contig050, whole genome shotgun sequence (17982 bp)
Overview 1 RT 1: 10654-15952 bp Neighborhood of RT #1 [10654, 15963] LptA RVT-GII group_II_RT_mat DDE_Tnp_1_3 Feature: gene Location: 10654-11562 bp Ori: EQB99335.1 Feature: domain Description: LptA Location: 10657-11419 bp Feature: domain Description: LptA Location: 10657-11419 bp Feature: gene Location: 12955-13386 bp Feature: gene Location: 13498-14322 bp Ori: EQB99337.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13783-14170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13783-14170 bp Feature: gene Location: 14393-14758 bp Ori: EQB99338.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 14504-14744 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 14504-14744 bp Feature: gene Location: 15217-15963 bp Ori: EQB99339.1 Feature: domain Description: DDE_Tnp_1_3 Location: 15529-15952 bp Feature: domain Description: DDE_Tnp_1_3 Location: 15529 -159 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LptA (COG1934), RVT-GII, group_II_RT_mat (TIGR04416), DDE_Tnp_1_3 (pfam13612)