myRT

myRT report for GCA_000452965.1_BPMSHR5848

Download annotations/find similar RTs

Seq: AVAJ01000011.1 Burkholderia pseudomallei MSHR5848 5848_12, whole genome shotgun sequence (18445 bp)
Overview 1 RT 1: 2-3372 bp Neighborhood of RT #1 [2, 3395] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 Feature: gene Location: 2-946 bp Feature: domain Description: DDE_Tnp_IS66 Location: 26-812 bp Feature: domain Description: DDE_Tnp_IS66 Location: 26-81 2 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 833-944 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 833-944 bp Feature: gene Location: 980-2242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1184-1841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 84-1 841 bp Feature: domain Description: GIIM Note: maturase Location: 1919-2135 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 9-21 35 bp Feature: gene Location: 2290-2691 bp Feature: gene Location: 2760-3395 bp Feature: domain Description: COG3436 Location: 3069-3372 bp Feature: domain Description: COG3436 Location: 3069-3372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3436 (Transposase ), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388)

Seq: AVAJ01000049.1 Burkholderia pseudomallei MSHR5848 5848_50, whole genome shotgun sequence (72623 bp)
Overview 1 RT 1: 52873-56868 bp Neighborhood of RT #1 [52873, 57149] PinE RVT-Retrons Feature: gene Location: 52873-53073 bp Feature: gene Location: 53871-54446 bp Feature: domain Description: PinE Location: 53880-54429 bp Feature: domain Description: PinE Location: 53880-5442 9 bp Feature: gene Location: 56181-57149 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56310-56868 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56310-56868 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-Retrons

Seq: AVAJ01000070.1 Burkholderia pseudomallei MSHR5848 5848_71, whole genome shotgun sequence (6590 bp)
Overview 1 RT 1: 2010-6260 bp Neighborhood of RT #1 [2010, 6283] MepB DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 Feature: gene Location: 2010-2621 bp Feature: domain Description: MepB Location: 2136-2496 bp Feature: domain Description: MepB Location: 213 6-2496 bp Feature: gene Location: 2869-3834 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2893-3679 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2893 -3 679 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3700-3811 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3 700-3 811 bp Feature: gene Location: 3868-5130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4072-4729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4072-4729 bp Feature: domain Description: GIIM Note: maturase Location: 4807-5023 bp Feature: domain Description: GIIM Note: maturase Location: 4807-5023 bp Feature: gene Location: 5178-5579 bp Feature: gene Location: 5648-6283 bp Feature: domain Description: COG3436 Location: 5957-6260 bp Feature: domain Description: COG3 43 6 Location: 5957-6260 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MepB (pfam08877), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), COG3436 (Transposase )

Seq: AVAJ01000093.1 Burkholderia pseudomallei MSHR5848 5848_94, whole genome shotgun sequence (21669 bp)
Overview 1 RT 1: 2-4899 bp Neighborhood of RT #1 [2, 4931] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 rve TnpB_IS66 Feature: gene Location: 2-946 bp Feature: domain Description: DDE_Tnp_IS66 Location: 26-812 bp Feature: domain Description: DDE_Tnp_IS66 Location: 26-812 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 833-944 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 833-94 4 bp Feature: gene Location: 980-2242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1184-1841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1184 -184 1 bp Feature: domain Description: GIIM Note: maturase Location: 1919-2135 bp Feature: domain Description: GIIM Note: maturase Location: 1919-2135 bp Feature: gene Location: 2760-3395 bp Feature: domain Description: COG3436 Location: 3069-3372 bp Feature: domain Description: COG34 36 Location: 3069-3372 bp Feature: gene Location: 3459-4931 bp Feature: domain Description: rve Location: 3849-4227 bp Feature: domain Description: rve Location: 384 9-4 227 bp Feature: domain Description: TnpB_IS66 Location: 4707-4899 bp Feature: domain Description: TnpB_IS66 Location: 4 707-4 899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3436 (Transposase ), rve (pfam00665), TnpB_IS66 (pfam05717), RVT-GII, GIIM (pfam08388)

Seq: AVAJ01000109.1 Burkholderia pseudomallei MSHR5848 5848_110, whole genome shotgun sequence (119990 bp)
Overview 1 RT 1: 113754-119960 bp Neighborhood of RT #1 [113754, 119989] Alginate_lyase Alginate_lyase DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 TnpB_IS66 Feature: gene Location: 113754-114998 bp Feature: domain Description: Alginate_lyase Location: 114039-114450 bp Feature: domain Description: Alginate_lyase Location: 114039-11445 0 bp Feature: domain Description: Alginate_lyase Location: 114639-114795 bp Feature: domain Description: Alginate_lyase Location: 114639-114795 bp Feature: gene Location: 116287-117234 bp Feature: domain Description: DDE_Tnp_IS66 Location: 116311-117097 bp Feature: domain Description: DDE_Tnp_IS66 Location: 116311-117097 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 117118-117229 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 117118-117229 bp Feature: gene Location: 117268-118530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117472-118129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117472-118129 bp Feature: domain Description: GIIM Note: maturase Location: 118207-118423 bp Feature: domain Description: GIIM Note: maturase Location: 118207-118423 bp Feature: gene Location: 119048-119683 bp Feature: domain Description: COG3436 Location: 119357-119660 bp Feature: domain Description: COG3436 Location: 11935 7-119660 bp Feature: gene Location: 119747-119989 bp Feature: domain Description: TnpB_IS66 Location: 119765-119960 bp Feature: domain Description: TnpB_IS66 Location: 119765 -119960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Alginate_lyase (pfam05426), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), COG3436 (Transposase ), TnpB_IS66 (pfam05717)