myRT

myRT report for GCA_000455885.1_ASM45588v1

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Seq: ATKF01000028.1 Fusobacterium hwasookii ChDC F174 Contig028, whole genome shotgun sequence (43680 bp)
Overview 1 RT 1: 25842-30620 bp Neighborhood of RT #1 [25842, 30868] fadh2 MATE_like_8 RVT-Retrons HTH_45 UPRTase Feature: gene Location: 25842-26708 bp Feature: domain Description: fadh2 Location: 25887-26688 bp Feature: domain Description: fadh2 Location: 25887-26688 bp Feature: gene Location: 26912-28252 bp Feature: domain Description: MATE_like_8 Location: 26939-28244 bp Feature: domain Description: MATE_like_8 Location: 26939-28244 bp Feature: gene Location: 28364-29413 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28589-29147 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28589-291 47 bp Feature: gene Location: 29679-29951 bp Feature: domain Description: HTH_45 Location: 29751-29883 bp Feature: domain Description: HTH_45 Location: 29751 -29883 bp Feature: gene Location: 29981-30868 bp Feature: domain Description: UPRTase Location: 30413-30620 bp Feature: domain Description: UPRTase Location: 3041 3-30620 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fadh2 (TIGR00676), MATE_like_8 (cd13134), RVT-Retrons, HTH_45 (pfam14947), UPRTase (pfam14681)

Seq: ATKF01000082.1 Fusobacterium hwasookii ChDC F174 Contig082, whole genome shotgun sequence (38732 bp)
Overview 1 RT 1: 14104-17720 bp Neighborhood of RT #1 [14104, 17720] RVT-Retrons Feature: gene Location: 14104-14565 bp Feature: gene Location: 14623-15159 bp Feature: gene Location: 15169-16185 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15388-15940 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15388-15940 bp Feature: gene Location: 16412-16747 bp Feature: gene Location: 16740-17720 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: ATKF01000107.1 Fusobacterium hwasookii ChDC F174 Contig107, whole genome shotgun sequence (98665 bp)
Overview 1 RT 1: 55783-68216 bp Neighborhood of RT #1 [55783, 68221] TIGR02687 AAA-ATPase_like PDDEXK_9 RVT-UG5 YeeA YeeA COG2865 Feature: gene Location: 55783-58296 bp Feature: domain Description: TIGR02687 Location: 55849-58156 bp Feature: domain Description: TIGR02687 Location: 55849-58156 bp Feature: gene Location: 58392-60020 bp Feature: domain Description: AAA-ATPase_like Location: 58407-59274 bp Feature: domain Description: AAA-ATPase_like Location: 58407-59274 bp Feature: domain Description: PDDEXK_9 Location: 59706-60012 bp Feature: domain Description: PDDEXK_9 Location: 59706-60012 bp Feature: gene Location: 60043-63057 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 60631-61120 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 6063 1-61120 bp Feature: gene Location: 63064-66684 bp Feature: domain Description: YeeA Location: 63676-65374 bp Feature: domain Description: YeeA Location: 63 676-653 74 bp Feature: domain Description: YeeA Location: 66148-66640 bp Feature: domain Description: YeeA Location: 66148-66640 bp Feature: gene Location: 66677-68221 bp Feature: domain Description: COG2865 Location: 66680-68216 bp Feature: domain Description: COG2865 Location: 66680-68216 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02687 (TIGR02687 family protein), AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011), RVT-UG5, YeeA (COG1002), COG2865 (Predicted transcriptional regulator, contains HTH domain )