myRT

myRT report for GCA_000456105.1_Esch_coli_HVH_6_3-8296502_V1

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Seq: KE698849.1 Escherichia coli HVH 6 (3-8296502) genomic scaffold acXvb-supercont1.14, whole genome shotgun sequence (155837 bp)
Overview 1 RT 1: 24770-29664 bp 2 RT 2: 33974-36726 bp 3 RT 3: 39241-44855 bp 4 RT 4: 152752-154912 bp Neighborhood of RT #1 [24770, 30401] DUF1380 RVT-GII GIIM HNHc DUF3560 Neighborhood of RT #2 [33974, 36731] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Neighborhood of RT #3 [39241, 44890] PRK13704 PRK13720 RVT-GII GIIM HNHc DUF932 Neighborhood of RT #4 [152752, 155157] PHA02517 RVT-GII GIIM Feature: gene Location: 24770-25192 bp Feature: domain Description: DUF1380 Location: 24773-25067 bp Feature: domain Description: DUF1 380 Location: 24773-25067 bp Feature: gene Location: 25189-25380 bp Feature: gene Location: 25694-26968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25697-26279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25697-26279 bp Feature: domain Description: GIIM Note: maturase Location: 26330-26564 bp Feature: domain Description: GIIM Note: maturase Location: 26330-26564 bp Feature: domain Description: HNHc Note: nucleases Location: 26774-26933 bp Feature: domain Description: HNHc Note: nucleases Location: 26774-26933 bp Feature: gene Location: 28758-28988 bp Feature: gene Location: 29040-30401 bp Feature: domain Description: DUF3560 Location: 29307-29664 bp Feature: domain Description: DUF3560 Location: 29307-29664 bp Feature: gene Location: 33974-35875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34241-35072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34241 -35072 bp Feature: domain Description: Intron_maturas2 Location: 35186-35444 bp Feature: domain Description: Intron_maturas2 Location: 351 86-35444 bp Feature: domain Description: HNHc Note: nucleases Location: 35618-35780 bp Feature: domain Description: HNHc Note: nucleases Location: 3561 8-35780 bp Feature: gene Location: 36070-36435 bp Feature: domain Description: PRK13732 Location: 36073-36385 bp Feature: domain Description: PRK1 3732 Location: 36073-36385 bp Feature: gene Location: 36498-36731 bp Feature: domain Description: DUF905 Location: 36528-36726 bp Feature: domain Description: DUF905 Location: 36528-36726 bp Feature: gene Location: 39241-39960 bp Feature: domain Description: PRK13704 Location: 39244-39955 bp Feature: domain Description: PRK1 3704 Location: 39244-39955 bp Feature: gene Location: 40182-40394 bp Feature: domain Description: PRK13720 Location: 40185-40392 bp Feature: domain Description: PRK1 3720 Location: 401 85-40392 bp Feature: gene Location: 40792-42066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40795-41377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40795-41 377 bp Feature: domain Description: GIIM Note: maturase Location: 41428-41662 bp Feature: domain Description: GIIM Note: maturase Location: 41 428-41 662 bp Feature: domain Description: HNHc Note: nucleases Location: 41872-42031 bp Feature: domain Description: HNHc Note: nucleases Location: 41 872-42031 bp Feature: gene Location: 43595-43888 bp Feature: gene Location: 44069-44890 bp Feature: domain Description: DUF932 Location: 44177-44855 bp Feature: domain Description: DUF932 Location: 441 77-44855 bp Feature: gene Location: 152752-153189 bp Feature: gene Location: 153071-153517 bp Feature: domain Description: PHA02517 Location: 153074-153515 bp Feature: domain Description: PHA0251 7 Location: 1 53074-1 5351 5 bp Feature: gene Location: 153634-155157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153907-154639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 53907-1 54639 bp Feature: domain Description: GIIM Note: maturase Location: 154714-154912 bp Feature: domain Description: GIIM Note: maturase Location: 1 5471 4-1 5491 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF3560 (pfam12083), Intron_maturas2 (pfam01348), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006), PRK13704 (plasmid SOS inhibition protein A; Provisional), PRK13720 (modulator of post-segregation killing protein; Provisional)
DUF932 (pfam06067), PHA02517 (putative transposase OrfB; Reviewed)

Seq: KE698857.1 Escherichia coli HVH 6 (3-8296502) genomic scaffold acXvb-supercont1.9, whole genome shotgun sequence (141673 bp)
Overview 1 RT 1: 126380-131080 bp Neighborhood of RT #1 [126380, 131080] PHA02517 RVT-GII GIIM InsG Feature: gene Location: 126380-126613 bp Feature: gene Location: 127803-128249 bp Feature: domain Description: PHA02517 Location: 127806-128247 bp Feature: domain Description: PHA02 517 Location: 12 7806-12 82 47 bp Feature: gene Location: 128366-129712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128462-129194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 8462 -12 9194 bp Feature: domain Description: GIIM Note: maturase Location: 129269-129467 bp Feature: domain Description: GIIM Note: maturase Location: 12 92 69-12 9467 bp Feature: gene Location: 129805-130917 bp Feature: domain Description: InsG Location: 129808-130846 bp Feature: domain Description: InsG Location: 12 9808-130846 bp Feature: gene Location: 130940-131080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsG (COG3385)