myRT

myRT report for GCA_000456365.1_Esch_coli_HVH_25_4-5851939_V1

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Seq: KE699046.1 Escherichia coli HVH 25 (4-5851939) genomic scaffold acXtx-supercont1.15, whole genome shotgun sequence (107551 bp)
Overview 1 RT 1: 23000-28754 bp 2 RT 2: 39236-41662 bp Neighborhood of RT #1 [23000, 28774] InsE PHA02517 RVT-GII GIIM rve PRK08181 Neighborhood of RT #2 [39236, 41670] InsE RVT-GII PRK10173 PRK10173 Feature: gene Location: 23000-23404 bp Ori: EQN85979.1 Feature: domain Description: InsE Location: 23030-23366 bp Feature: domain Description: InsE Location: 23030-23366 bp Feature: gene Location: 23433-23789 bp Ori: EQN85980.1 Feature: domain Description: PHA02517 Location: 23436-23745 bp Feature: domain Description: PHA0251 7 Location: 23436-23745 bp Feature: gene Location: 23906-25429 bp Ori: EQN85981.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24179-24911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 79-2491 1 bp Feature: domain Description: GIIM Note: maturase Location: 24986-25184 bp Feature: domain Description: GIIM Note: maturase Location: 24986-251 84 bp Feature: gene Location: 26523-28022 bp Ori: EQN85982.1 Feature: domain Description: rve Location: 26895-27288 bp Feature: domain Description: rve Location: 26895-27288 bp Feature: gene Location: 28019-28774 bp Ori: EQN85983.1 Feature: domain Description: PRK08181 Location: 28043-28754 bp Feature: domain Description: PRK081 81 Location: 28043-28754 bp Feature: gene Location: 39236-39496 bp Feature: gene Location: 39598-39924 bp Ori: EQN85996.1 Feature: domain Description: InsE Location: 39601-39922 bp Feature: domain Description: InsE Location: 39601 -39922 bp Feature: gene Location: 40618-40887 bp Ori: EQN85599.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40657-40726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40657-40726 bp Feature: gene Location: 40926-41246 bp Ori: EQN85600.1 Feature: domain Description: PRK10173 Location: 40929-41157 bp Feature: domain Description: PRK1 01 73 Location: 40929-41 1 57 bp Feature: gene Location: 41221-41670 bp Ori: EQN85601.1 Feature: domain Description: PRK10173 Location: 41224-41662 bp Feature: domain Description: PRK1 01 73 Location: 41 224-41 662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), rve (pfam00665), PRK08181 (transposase; Validated), PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: KE699041.1 Escherichia coli HVH 25 (4-5851939) genomic scaffold acXtx-supercont1.10, whole genome shotgun sequence (729262 bp)
Overview 1 RT 1: 571595-575859 bp Neighborhood of RT #1 [571595, 575867] group_II_RT_mat RVT-GII GIIM YesM Feature: gene Location: 571595-572500 bp Feature: gene Location: 572986-573318 bp Ori: EQN88099.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 573148-573310 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 573148-573310 bp Feature: gene Location: 573573-574055 bp Ori: EQN88100.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 573582-573822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 573582 -57382 2 bp Feature: domain Description: GIIM Note: maturase Location: 573870-574050 bp Feature: domain Description: GIIM Note: maturase Location: 573870-574050 bp Feature: gene Location: 574377-574565 bp Feature: gene Location: 574638-575867 bp Ori: EQN88102.1 Feature: domain Description: YesM Location: 575118-575859 bp Feature: domain Description: YesM Location: 575118-575859 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: KE699051.1 Escherichia coli HVH 25 (4-5851939) genomic scaffold acXtx-supercont1.2, whole genome shotgun sequence (453032 bp)
Overview 1 RT 1: 99608-105639 bp Neighborhood of RT #1 [99608, 105776] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 99608-99748 bp Ori: EQO05194.1 Feature: domain Description: SfsB Location: 99617-99689 bp Feature: domain Description: SfsB Location: 99617-99689 bp Feature: gene Location: 99745-100215 bp Feature: gene Location: 100562-103771 bp Ori: EQO05196.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 101090-101579 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 101090-101579 bp Feature: domain Description: nitrilase Location: 103085-103682 bp Feature: domain Description: nitrilase Location: 103 085-103 682 bp Feature: gene Location: 104087-104869 bp Ori: EQO05197.1 Feature: domain Description: AbiEi_3_N Location: 104099-104360 bp Feature: domain Description: AbiEi_3 _N Location: 104099-1043 60 bp Feature: domain Description: AbiEi_3 Location: 104372-104828 bp Feature: domain Description: AbiEi_3 Location: 1043 72-104828 bp Feature: gene Location: 104856-105776 bp Ori: EQO05198.1 Feature: domain Description: AbiEii Location: 104898-105639 bp Feature: domain Description: AbiEii Location: 104898-10563 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)