myRT

myRT report for GCA_000456725.1_Esch_coli_HVH_45_4-3129918_V1

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Seq: KE699267.1 Escherichia coli HVH 45 (4-3129918) genomic scaffold acXuF-supercont1.2, whole genome shotgun sequence (3847391 bp)
Overview 1 RT 1: 904515-912167 bp Neighborhood of RT #1 [904515, 912167] DUF4917 AAA_15 RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 904515-905534 bp Ori: EQO78760.1 Feature: domain Description: DUF4917 Location: 904575-905499 bp Feature: domain Description: DUF491 7 Location: 904575-905499 bp Feature: gene Location: 906933-909179 bp Ori: EQO78761.1 Feature: domain Description: AAA_15 Location: 906936-907944 bp Feature: domain Description: AAA_1 5 Location: 906936-907944 bp Feature: gene Location: 909294-910394 bp Ori: EQO78762.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 909474-910008 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 909474-91 0008 bp Feature: gene Location: 911050-911544 bp Ori: EQO78763.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 911194-911368 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 91 1 1 94-91 1 368 bp Feature: gene Location: 911916-912167 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4917 (pfam16263), AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)

Seq: KE699264.1 Escherichia coli HVH 45 (4-3129918) genomic scaffold acXuF-supercont1.1, whole genome shotgun sequence (1439349 bp)
Overview 1 RT 1: 1165571-1171790 bp Neighborhood of RT #1 [1165571, 1171790] YhhI YhhI YhhI RVT-GII GIIM YhhI YhhI YhhI Feature: gene Location: 1165571-1166074 bp Feature: gene Location: 1166194-1167330 bp Ori: EQO80708.1 Feature: domain Description: YhhI Location: 1166197-1166560 bp Feature: domain Description: YhhI Location: 1166197-1166560 bp Feature: domain Description: YhhI Location: 1166617-1166971 bp Feature: domain Description: YhhI Location: 1166617-1166971 bp Feature: domain Description: YhhI Location: 1166989-1167232 bp Feature: domain Description: YhhI Location: 1166989-11672 32 bp Feature: gene Location: 1167777-1169027 bp Ori: EQO80709.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1167981-1168638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1167981-1168638 bp Feature: domain Description: GIIM Note: maturase Location: 1168719-1168941 bp Feature: domain Description: GIIM Note: maturase Location: 1168719-1168941 bp Feature: gene Location: 1169559-1170515 bp Ori: EQO80710.1 Feature: domain Description: YhhI Location: 1169562-1169907 bp Feature: domain Description: YhhI Location: 1169562 -1169907 bp Feature: domain Description: YhhI Location: 1169964-1170318 bp Feature: domain Description: YhhI Location: 1169964-1170318 bp Feature: domain Description: YhhI Location: 1170318-1170498 bp Feature: domain Description: YhhI Location: 1170318-1170498 bp Feature: gene Location: 1170828-1171790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: KE699272.1 Escherichia coli HVH 45 (4-3129918) genomic scaffold acXuF-supercont1.7, whole genome shotgun sequence (186520 bp)
Overview 1 RT 1: 145621-149445 bp 2 RT 2: 159784-162459 bp Neighborhood of RT #1 [145621, 149447] InsE PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #2 [159784, 162467] InsE PHA02517 RVT-GII PRK10173 PRK10173 Feature: gene Location: 145621-146025 bp Ori: EQO71621.1 Feature: domain Description: InsE Location: 145651-145987 bp Feature: domain Description: InsE Location: 145651-145987 bp Feature: gene Location: 146054-146410 bp Ori: EQO71622.1 Feature: domain Description: PHA02517 Location: 146057-146366 bp Feature: domain Description: PHA02517 Location: 146057-1463 66 bp Feature: gene Location: 146527-148050 bp Ori: EQO71623.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146800-147532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146800-14753 2 bp Feature: domain Description: GIIM Note: maturase Location: 147607-147805 bp Feature: domain Description: GIIM Note: maturase Location: 147607-147805 bp Feature: gene Location: 148642-149121 bp Ori: EQO71624.1 Feature: domain Description: PHA02517 Location: 148702-149056 bp Feature: domain Description: PHA02517 Location: 148702-149056 bp Feature: gene Location: 149121-149447 bp Ori: EQO71625.1 Feature: domain Description: InsE Location: 149124-149445 bp Feature: domain Description: InsE Location: 149124-149445 bp Feature: gene Location: 159784-160110 bp Ori: EQO71638.1 Feature: domain Description: InsE Location: 159787-160108 bp Feature: domain Description: InsE Location: 159787-160108 bp Feature: gene Location: 160110-160589 bp Ori: EQO71639.1 Feature: domain Description: PHA02517 Location: 160170-160524 bp Feature: domain Description: PHA02517 Location: 160170-160524 bp Feature: gene Location: 161181-161684 bp Ori: EQO71640.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161454-161523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161454-161523 bp Feature: gene Location: 161723-162043 bp Ori: EQO71641.1 Feature: domain Description: PRK10173 Location: 161726-161954 bp Feature: domain Description: PRK10173 Location: 161726-161954 bp Feature: gene Location: 162018-162467 bp Ori: EQO71642.1 Feature: domain Description: PRK10173 Location: 162021-162459 bp Feature: domain Description: PRK10173 Location: 162021-162459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)