myRT

myRT report for GCA_000457165.1_Esch_coli_HVH_82_4-2209276_V1

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Seq: KE699566.1 Escherichia coli HVH 82 (4-2209276) genomic scaffold acYwv-supercont1.1, whole genome shotgun sequence (2867517 bp)
Overview 1 RT 1: 882446-888551 bp 2 RT 2: 1681035-1684917 bp 3 RT 3: 2831975-2836037 bp Neighborhood of RT #1 [882446, 888631] FaeA COG3547 RVT-GII GIIM PHA02517 PHA02517 Neighborhood of RT #2 [1681035, 1684922] dut slmA RVT-Retrons pyrE rph Neighborhood of RT #3 [2831975, 2836039] TagG PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 882446-882667 bp Feature: domain Description: FaeA Location: 882449-882626 bp Feature: domain Description: FaeA Location: 882449-882626 bp Feature: gene Location: 883457-884392 bp Feature: domain Description: COG3547 Location: 883493-884276 bp Feature: domain Description: COG3547 Location: 883493-884276 bp Feature: gene Location: 885075-886598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 885348-886080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 885348-886080 bp Feature: domain Description: GIIM Note: maturase Location: 886155-886353 bp Feature: domain Description: GIIM Note: maturase Location: 8861 55-886353 bp Feature: gene Location: 887190-887429 bp Feature: domain Description: PHA02517 Location: 887193-887364 bp Feature: domain Description: PHA0251 7 Location: 8871 93-887364 bp Feature: gene Location: 887759-888631 bp Feature: domain Description: PHA02517 Location: 887774-888551 bp Feature: domain Description: PHA0251 7 Location: 887774-888551 bp Feature: gene Location: 1681035-1681493 bp Feature: domain Description: dut Location: 1681041-1681488 bp Feature: domain Description: dut Location: 1 681 041 -1 681 488 bp Feature: gene Location: 1681600-1682196 bp Feature: domain Description: slmA Location: 1681606-1682182 bp Feature: domain Description: slmA Location: 1 681 606-1 6821 82 bp Feature: gene Location: 1682242-1683201 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1682377-1682926 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 682377-1 682926 bp Feature: gene Location: 1683499-1684140 bp Feature: domain Description: pyrE Location: 1683502-1684135 bp Feature: domain Description: pyrE Location: 1 683502-1 6841 35 bp Feature: gene Location: 1684206-1684922 bp Feature: domain Description: rph Location: 1684209-1684917 bp Feature: domain Description: rph Location: 1 684209-1 68491 7 bp Feature: gene Location: 2831975-2832553 bp Feature: domain Description: TagG Location: 2831996-2832518 bp Feature: domain Description: TagG Location: 2831 996-283251 8 bp Feature: gene Location: 2832556-2832927 bp Feature: domain Description: PHA02517 Location: 2832559-2832925 bp Feature: domain Description: PHA0251 7 Location: 2832559-2832925 bp Feature: gene Location: 2833119-2834642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2833392-2834124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2833392-28341 24 bp Feature: domain Description: GIIM Note: maturase Location: 2834199-2834397 bp Feature: domain Description: GIIM Note: maturase Location: 28341 99-2834397 bp Feature: gene Location: 2835234-2835713 bp Feature: domain Description: PHA02517 Location: 2835294-2835648 bp Feature: domain Description: PHA0251 7 Location: 2835294-2835648 bp Feature: gene Location: 2835713-2836039 bp Feature: domain Description: InsE Location: 2835716-2836037 bp Feature: domain Description: InsE Location: 283571 6-2836037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FaeA (pfam04703), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)
TagG (COG1682), InsE (COG2963)