myRT

myRT report for GCA_000457245.1_Esch_coli_HVH_88_4-5854636_V1

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Seq: KE699621.1 Escherichia coli HVH 88 (4-5854636) genomic scaffold acYxQ-supercont1.1, whole genome shotgun sequence (1329350 bp)
Overview 1 RT 1: 280097-286316 bp Neighborhood of RT #1 [280097, 286316] YhhI YhhI YhhI RVT-GII GIIM YhhI YhhI YhhI Feature: gene Location: 280097-281059 bp Feature: gene Location: 281372-282328 bp Feature: domain Description: YhhI Location: 281375-281720 bp Feature: domain Description: YhhI Location: 281 375-281 720 bp Feature: domain Description: YhhI Location: 281777-282131 bp Feature: domain Description: YhhI Location: 281 777-2821 31 bp Feature: domain Description: YhhI Location: 282131-282311 bp Feature: domain Description: YhhI Location: 2821 31 -28231 1 bp Feature: gene Location: 282860-284110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283064-283721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283064-283721 bp Feature: domain Description: GIIM Note: maturase Location: 283802-284024 bp Feature: domain Description: GIIM Note: maturase Location: 283802-284024 bp Feature: gene Location: 284557-285693 bp Feature: domain Description: YhhI Location: 284560-284923 bp Feature: domain Description: YhhI Location: 284560-284923 bp Feature: domain Description: YhhI Location: 284980-285334 bp Feature: domain Description: YhhI Location: 284980-285334 bp Feature: domain Description: YhhI Location: 285352-285595 bp Feature: domain Description: YhhI Location: 285352-285595 bp Feature: gene Location: 285813-286316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: KE699624.1 Escherichia coli HVH 88 (4-5854636) genomic scaffold acYxQ-supercont1.12, whole genome shotgun sequence (150754 bp)
Overview 1 RT 1: 1-3872 bp 2 RT 2: 104675-108514 bp Neighborhood of RT #1 [1, 3877] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Neighborhood of RT #2 [104675, 108537] PHA02517 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 1-475 bp Feature: gene Location: 1050-2951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1317-2148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1317-2 148 bp Feature: domain Description: Intron_maturas2 Location: 2262-2520 bp Feature: domain Description: Intron_maturas2 Location: 2 2 62 -2 52 0 bp Feature: domain Description: HNHc Note: nucleases Location: 2694-2856 bp Feature: domain Description: HNHc Note: nucleases Location: 2 694-2 856 bp Feature: gene Location: 3146-3586 bp Feature: domain Description: PRK13732 Location: 3149-3584 bp Feature: domain Description: PRK13732 Location: 3149-3584 bp Feature: gene Location: 3644-3877 bp Feature: domain Description: DUF905 Location: 3674-3872 bp Feature: domain Description: DUF905 Location: 3674-3872 bp Feature: gene Location: 104675-105112 bp Feature: gene Location: 104994-105440 bp Feature: domain Description: PHA02517 Location: 104997-105438 bp Feature: domain Description: PHA02 517 Location: 104997-105438 bp Feature: gene Location: 105557-107080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105830-106562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105830-106562 bp Feature: domain Description: GIIM Note: maturase Location: 106637-106835 bp Feature: domain Description: GIIM Note: maturase Location: 106637-106835 bp Feature: gene Location: 108106-108537 bp Feature: domain Description: DDE_Tnp_IS66 Location: 108112-108382 bp Feature: domain Description: DDE_Tnp_IS66 Location: 108112 -108382 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 108403-108514 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 108403-108514 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF905 (pfam06006), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)